RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 WRNIP1Q96S55 665 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 TMEM206Q9H813 350 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 TMEM94Q12767 1356 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 PTK2BQ14289 1009 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 UBE2SQ16763 222 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 KIAA0232Q92628 1395 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 SOS2Q07890 1332 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-212ENST00000491769 IL6STP40189 918 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-212ENST00000491769 LLGL1Q15334 1064 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 FAM160B2Q86V87 743 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 UNC5CLQ8IV45 518 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 TRIML1Q8N9V2 468 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 FARP1Q9Y4F1 1045 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-212ENST00000491769 LMNB2Q03252 620 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 RCN2Q14257 317 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 HABP4Q5JVS0 413 aaKnown RBP14.21□□□□□ -0.13
COL6A3-212ENST00000491769 HSPH1Q92598 858 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 KRT82Q9NSB4 513 aa14.21□□□□□ -0.13
COL6A3-212ENST00000491769 GOLGA8QA0A0J9YX86 632 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 GOLGA8OA6NCC3 632 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 TMEM247A6NEH6 219 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 GOLGA8NF8WBI6 632 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 SESN3P58005 492 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 ME3Q16798 604 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 C8orf34Q49A92 452 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 CXorf38Q8TB03 319 aa14.21□□□□□ -0.14
COL6A3-212ENST00000491769 CNOT6LQ96LI5 555 aaKnown RBP14.21□□□□□ -0.14
COL6A3-212ENST00000491769 GOLGA8IPA6NC78 632 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 GOLGA8JA6NMD2 632 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 CDC37Q16543 378 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 AFPP02771 609 aaKnown RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 RASSF7Q02833 373 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 PPP2R5EQ16537 467 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 TRIM67Q6ZTA4 783 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 THNSL1Q8IYQ7 743 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 TBCKQ8TEA7 893 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 DESI2Q9BSY9 194 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 XPO4Q9C0E2 1151 aaKnown RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 UBE2TQ9NPD8 197 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 ATP10DQ9P241 1426 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 TEX2Q8IWB9 1127 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 GADD45BO75293 160 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 KPNA2P52292 529 aaKnown RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 ELF2Q15723 593 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 CC2D1AQ6P1N0 951 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 CCDC51Q96ER9 411 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 DYNLL2Q96FJ2 89 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 ABCD1P33897 745 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 ADCY1Q08828 1119 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 RSBN1LQ6PCB5 846 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-212ENST00000491769 STK17AQ9UEE5 414 aa14.2□□□□□ -0.14
COL6A3-212ENST00000491769 CLNS1AP54105 237 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 USP17L2Q6R6M4 530 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 DEPDC1BQ8WUY9 529 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 TCP11Q8WWU5 503 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 DYRK4Q9NR20 520 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 PCP11498 1178 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 SURF1Q15526 300 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 TTC19Q6DKK2 380 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 FBXL13Q8NEE6 735 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 IFT43Q96FT9 208 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 YIPF2Q9BWQ6 316 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 SASH1O94885 1247 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 CACNB3P54284 484 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 PPWD1Q96BP3 646 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 OTUD5Q96G74 571 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 BAIAP2L1Q9UHR4 511 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 GDAQ9Y2T3 454 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 A6NNZ2 444 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 K7ERI5 159 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 OCM2P0CE71 109 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 OCMP0CE72 109 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 KCNJ6P48051 423 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 MXD4Q14582 209 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 TUBB8Q3ZCM7 444 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 PHLDB3Q6NSJ2 640 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 G3BP2Q9UN86 482 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 CTTNQ14247 550 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 KIAA1755Q5JYT7 1200 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 PDCD7Q8N8D1 485 aaKnown RBP14.19□□□□□ -0.14
COL6A3-212ENST00000491769 PPP2R3CQ969Q6 453 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 SH3KBP1Q96B97 665 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 EHHADHQ08426 723 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 POTEDQ86YR6 584 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 ANKRD13CQ8N6S4 541 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 MMP19Q99542 508 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 ZWILCHQ9H900 591 aa14.19□□□□□ -0.14
COL6A3-212ENST00000491769 PCGF5Q86SE9 256 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 HINFPQ9BQA5 517 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 LZICQ8WZA0 190 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 MAGOHBQ96A72 148 aaKnown RBP14.18□□□□□ -0.14
COL6A3-212ENST00000491769 Q9H521 79 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 RAVER2Q9HCJ3 691 aaKnown RBP14.18□□□□□ -0.14
COL6A3-212ENST00000491769 PTH1RQ03431 593 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 STXBP2Q15833 593 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 ANO4Q32M45 955 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 SRPK1Q96SB4 655 aaKnown RBP14.18□□□□□ -0.14
COL6A3-212ENST00000491769 MLH3Q9UHC1 1453 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 TOM1L1O75674 476 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms