RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 WDR59Q6PJI9 974 aa12.24□□□□□ -0.45
HLA-DMB-260ENST00000477537 CATSPER3Q86XQ3 398 aa12.24□□□□□ -0.45
HLA-DMB-260ENST00000477537 UBXN4Q92575 508 aa12.24□□□□□ -0.45
HLA-DMB-260ENST00000477537 ZNHIT6Q9NWK9 470 aaKnown RBP12.24□□□□□ -0.45
HLA-DMB-260ENST00000477537 REXO2Q9Y3B8 237 aaKnown RBP12.24□□□□□ -0.45
HLA-DMB-260ENST00000477537 EFCAB8A8MWE9 144 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 NFKBIEO00221 500 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 PIK3CDO00329 1044 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 MEIS1O00470 390 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 MSH4O15457 936 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 CYP3A4P08684 503 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 YBX3P16989 372 aaKnown RBP eCLIP12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 TRAF1Q13077 416 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 HERC4Q5GLZ8 1057 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 FKBP1CQ5VVH2 108 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 SLC35F6Q8N357 371 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 AGBL3Q8NEM8 1001 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 CYP2W1Q8TAV3 490 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 FAM20AQ96MK3 541 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 FGFBP2Q9BYJ0 223 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 VPS33BQ9H267 617 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 NDST4Q9H3R1 872 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 ABCB11O95342 1321 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 A0A1W2PQJ5 194 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 SPDYE4A6NLX3 237 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 TBC1D12O60347 775 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 CFBP00751 764 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 SPATA31C1P0DKV0 1188 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 MEA1Q16626 185 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 ZCWPW2Q504Y3 356 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 ARSHQ5FYA8 562 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 FIGNQ5HY92 759 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 FOXR2Q6PJQ5 311 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 SAMD1Q6SPF0 538 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 NELFCDQ8IXH7 590 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 MTMR14Q8NCE2 650 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 CHURC1Q8WUH1 139 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 TBC1D5Q92609 795 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 ZHX3Q9H4I2 956 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 VCPKMTQ9H867 229 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 DNM3Q9UQ16 869 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 PCDHA2Q9Y5H9 948 aa12.23□□□□□ -0.45
HLA-DMB-260ENST00000477537 CTAGE9A4FU28 777 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 GCOM1H8Y6P7 765 aaPredicted RBP12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 TRAF5O00463 557 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 POLR2MP0CAP2 368 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 ERCC3P19447 782 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 RPA1P27694 616 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 CAP2P40123 477 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 PRELPP51888 382 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 PSMC6P62333 389 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 PABPC4Q13310 644 aaKnown RBP eCLIP12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 KIF4BQ2VIQ3 1234 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 FAM83AQ86UY5 434 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 IQCDQ96DY2 449 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 RANBP17Q9H2T7 1088 aaKnown RBP12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 VAV3Q9UKW4 847 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 SIK3Q9Y2K2 1263 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 STK24Q9Y6E0 443 aa12.22□□□□□ -0.45
HLA-DMB-260ENST00000477537 FRMD3A2A2Y4 597 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 H2AFXP16104 143 aaPredicted RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 CYLC1P35663 651 aaPredicted RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 HERVK_113P62684 666 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 CBX1P83916 185 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 FKBP3Q00688 224 aaKnown RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 CXCL9Q07325 125 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 CCDC40Q4G0X9 1142 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 ZBED3Q96IU2 234 aaPredicted RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 FEZ1Q99689 392 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 GLIS2Q9BZE0 524 aaPredicted RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 TANGO6Q9C0B7 1094 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 SH2D4AQ9H788 454 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 MMRN2Q9H8L6 949 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 NHEJ1Q9H9Q4 299 aaPredicted RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 FAM207AQ9NSI2 230 aaPredicted RBP12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 MYO1AQ9UBC5 1043 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 TRIM10Q9UDY6 481 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 COL4A3BPQ9Y5P4 624 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 PITPNM2Q9BZ72 1349 aa12.21□□□□□ -0.45
HLA-DMB-260ENST00000477537 DCAF8L1A6NGE4 600 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 EML1O00423 815 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 KRT83P78385 493 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 CYP4A11Q02928 519 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 GIT2Q14161 759 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 NBPF9Q3BBW0 867 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 TEX35Q5T0J7 233 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 CCDC84Q86UT8 332 aaPredicted RBP12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 FAM160B2Q86V87 743 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 SYT2Q8N9I0 419 aaPredicted RBP12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 SCFD1Q8WVM8 642 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 NAPGQ99747 312 aaPredicted RBP12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 EMILIN3Q9NT22 766 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 CDC23Q9UJX2 597 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 GUCA1BQ9UMX6 200 aa12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 MRPL11Q9Y3B7 192 aaKnown RBP12.21□□□□□ -0.46
HLA-DMB-260ENST00000477537 IGLV3-22A0A075B6J6 115 aa12.2□□□□□ -0.46
HLA-DMB-260ENST00000477537 SHTN1A0MZ66 631 aa12.2□□□□□ -0.46
HLA-DMB-260ENST00000477537 EPHB6O15197 1021 aa12.2□□□□□ -0.46
HLA-DMB-260ENST00000477537 PLA2G6O60733 806 aa12.2□□□□□ -0.46
HLA-DMB-260ENST00000477537 KIF20AO95235 890 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms