RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 CCSER1Q9C0I3 900 aa12.1□□□□□ -0.47
COL27A1-204ENST00000477421 FAM204AQ9H8W3 233 aa12.1□□□□□ -0.47
COL27A1-204ENST00000477421 SUGCTQ9HAC7 445 aa12.1□□□□□ -0.47
COL27A1-204ENST00000477421 MRPL11Q9Y3B7 192 aaKnown RBP12.1□□□□□ -0.47
COL27A1-204ENST00000477421 ATP1A1P05023 1023 aaKnown RBP12.09□□□□□ -0.47
COL27A1-204ENST00000477421 IVLP07476 585 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 RC3H1Q5TC82 1133 aaKnown RBP12.09□□□□□ -0.47
COL27A1-204ENST00000477421 FAM186BQ8IYM0 893 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 SPZ1Q9BXG8 430 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 IMPG2Q9BZV3 1241 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 USTQ9Y2C2 406 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 CTIFO43310 598 aaKnown RBP12.09□□□□□ -0.47
COL27A1-204ENST00000477421 ECE2O60344 883 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 RAD54LQ92698 747 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 NUCKS1Q9H1E3 243 aaKnown RBP12.09□□□□□ -0.47
COL27A1-204ENST00000477421 EPB41L5Q9HCM4 733 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 GCNT4Q9P109 453 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 MRFAP1Q9Y605 127 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 DCCP43146 1447 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 KDM4FA0A1W2PPD8 638 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 ESYT3A0FGR9 886 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 TNNI1P19237 187 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 ZNF543Q08ER8 600 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 CDC42EP5Q6NZY7 148 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 SLC30A10Q6XR72 485 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 BARGINQ6ZT62 677 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 PHLDB2Q86SQ0 1253 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 NLRX1Q86UT6 975 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 CCDC26Q8TAB7 109 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 ANKRD7Q92527 254 aa12.09□□□□□ -0.47
COL27A1-204ENST00000477421 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
COL27A1-204ENST00000477421 TAL1P17542 331 aaPredicted RBP12.08□□□□□ -0.48
COL27A1-204ENST00000477421 LRRC63Q05C16 580 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 TERF2Q15554 542 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 NFRKBQ6P4R8 1299 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 PLVAPQ9BX97 442 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 GOLGA8IPA6NC78 632 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 GOLGA8JA6NMD2 632 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 SLC37A4O43826 429 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 PAK2Q13177 524 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 TMEM179Q6ZVK1 233 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 PODNQ7Z5L7 613 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 SMARCAL1Q9NZC9 954 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 AFPP02771 609 aaKnown RBP12.08□□□□□ -0.48
COL27A1-204ENST00000477421 CEP85LQ5SZL2 805 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 ARHGEF16Q5VV41 709 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 C16orf86Q6ZW13 317 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 SLC51AQ86UW1 340 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 CCDC170Q8IYT3 715 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 SUPT20HQ8NEM7 779 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 RPGRIP1Q96KN7 1286 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 TEKT3Q9BXF9 490 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 AP1M1Q9BXS5 423 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 LIMA1Q9UHB6 759 aaKnown RBP12.08□□□□□ -0.48
COL27A1-204ENST00000477421 JRKLQ9Y4A0 524 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 DUSP10Q9Y6W6 482 aa12.08□□□□□ -0.48
COL27A1-204ENST00000477421 GPR75-ASB3A0A0A6YYF3 556 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 ZBED4O75132 1171 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 HEXIM1O94992 359 aaKnown RBP12.07□□□□□ -0.48
COL27A1-204ENST00000477421 PLEKP08567 350 aaPredicted RBP12.07□□□□□ -0.48
COL27A1-204ENST00000477421 BCRP11274 1271 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 PMS1P54277 932 aaKnown RBP12.07□□□□□ -0.48
COL27A1-204ENST00000477421 VSNL1P62760 191 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 KCNH2Q12809 1159 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 CPLX4Q7Z7G2 160 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 ZMYND12Q9H0C1 365 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 AKAP12Q02952 1782 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 CYTH3O43739 400 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 MYZAPP0CAP1 466 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 PRPHP41219 470 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 ALKBH5Q6P6C2 394 aaKnown RBP12.07□□□□□ -0.48
COL27A1-204ENST00000477421 JMJD4Q9H9V9 463 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 ZNF277Q9NRM2 450 aaPredicted RBP12.07□□□□□ -0.48
COL27A1-204ENST00000477421 RASAL2Q9UJF2 1139 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 AMFRQ9UKV5 643 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 A0A0U1RQJ8 604 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 GYS1P13807 737 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 KRT71Q3SY84 523 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 SLC10A5Q5PT55 438 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 CCDC105Q8IYK2 499 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 BANK1Q8NDB2 785 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 ZNF341Q9BYN7 854 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 UTP11Q9Y3A2 253 aaKnown RBP12.07□□□□□ -0.48
COL27A1-204ENST00000477421 TACC3Q9Y6A5 838 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 CNTNAP4Q9C0A0 1308 aa12.07□□□□□ -0.48
COL27A1-204ENST00000477421 RNF40O75150 1001 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 RHOBTB3O94955 611 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 POLD1P28340 1107 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 CALCOCO2Q13137 446 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 SEL1L2Q5TEA6 688 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 SP8Q8IXZ3 490 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 NOA1Q8NC60 698 aaKnown RBP12.06□□□□□ -0.48
COL27A1-204ENST00000477421 FLAD1Q8NFF5 587 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 IFT74Q96LB3 600 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 METTL14Q9HCE5 456 aaKnown RBP12.06□□□□□ -0.48
COL27A1-204ENST00000477421 PPANQ9NQ55 473 aaKnown RBP12.06□□□□□ -0.48
COL27A1-204ENST00000477421 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.06□□□□□ -0.48
COL27A1-204ENST00000477421 VIRMAQ69YN4 1812 aaKnown RBP12.06□□□□□ -0.48
COL27A1-204ENST00000477421 hCG_1984214I3L0E3 225 aa12.06□□□□□ -0.48
COL27A1-204ENST00000477421 ERVK-24P63145 666 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms