RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CAPZA3Q96KX2 299 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 NAP1L4Q99733 375 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 AMNQ9BXJ7 453 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ABCB6Q9NP58 842 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 MYH10P35580 1976 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 MEIS1O00470 390 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 PLSCR1O15162 318 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ZNF185O15231 689 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 KIF11P52732 1056 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 PSMC6P62333 389 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 HDLBPQ00341 1268 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ARSHQ5FYA8 562 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 CCDC65Q8IXS2 484 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 EHBP1Q8NDI1 1231 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ETNPPLQ8TBG4 499 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 HNRNPLLQ8WVV9 542 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 BAP1Q92560 729 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 IQCDQ96DY2 449 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 MBOAT7Q96N66 472 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 PURBQ96QR8 312 aaKnown RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 ZHX3Q9H4I2 956 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 RNF216Q9NWF9 866 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-217ENST00000466159 COL4A3BPQ9Y5P4 624 aa9.91□□□□□ -0.82
SYNE1-217ENST00000466159 FAM86B1E9PN63 330 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 H0YIN7 160 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 MAP2K7O14733 419 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 GH2P01242 217 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 FAM86B2P0C5J1 330 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 OAS2P29728 719 aaKnown RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 FKBP1AP62942 108 aaKnown RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 TUBB4BP68371 445 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SPIRE1Q08AE8 756 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 AP3B2Q13367 1082 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 CCDC40Q4G0X9 1142 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 FBXO11Q86XK2 927 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 CATSPER3Q86XQ3 398 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SPICE1Q8N0Z3 855 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SCFD1Q8WVM8 642 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 PRMT6Q96LA8 375 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 IFIH1Q9BYX4 1025 aaKnown RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 DEF6Q9H4E7 631 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SERPINA10Q9UK55 444 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 PCDHA13Q9Y5I0 950 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 A0A1W2PRG0 241 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 KIF20AO95235 890 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 KRT18P05783 430 aaKnown RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 HOXA13P31271 388 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SLC12A3P55017 1021 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 APBA1Q02410 837 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SYDE2Q5VT97 1194 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 FOXR2Q6PJQ5 311 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SLFN12Q8IYM2 578 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 GMCL1P1Q8NEA9 526 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 NEK11Q8NG66 645 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 SECISBP2LQ93073 1101 aaKnown RBP9.9□□□□□ -0.82
SYNE1-217ENST00000466159 LENG9Q96B70 501 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 MLXIPQ9HAP2 919 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 NLRC4Q9NPP4 1024 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 EMILIN3Q9NT22 766 aa9.9□□□□□ -0.82
SYNE1-217ENST00000466159 ZNF646O15015 1829 aaPredicted RBP9.9□□□□□ -0.83
SYNE1-217ENST00000466159 OPLAHO14841 1288 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 AKR1B10O60218 316 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 HMGB2P26583 209 aaKnown RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 HOXA7P31268 230 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 CASP5P51878 434 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 PABPC4Q13310 644 aaKnown RBP eCLIP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 CACNA2D4Q7Z3S7 1137 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 CYP2W1Q8TAV3 490 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 GMCL1Q96IK5 515 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 CRACR2AQ9BSW2 395 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 KCTD10Q9H3F6 313 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 JADE2Q9NQC1 790 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 L1RE1Q9UN81 338 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 CAPN6Q9Y6Q1 641 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 SPDYE3A6NKU9 549 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 H3BQF6 201 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 PDE2AO00408 941 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 USO1O60763 962 aaKnown RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 ERLIN1O75477 346 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 NPM3O75607 178 aaKnown RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 NOL4O94818 638 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 MOCS3O95396 460 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 SPATA31C1P0DKV0 1188 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 BMP3P12645 472 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 GFPT1Q06210 699 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 RBM26Q5T8P6 1007 aaKnown RBP9.89□□□□□ -0.83
SYNE1-217ENST00000466159 PDXDC1Q6P996 788 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 MOXD1Q6UVY6 613 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 FLAD1Q8NFF5 587 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 CSRNP1Q96S65 589 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 TSGA10Q9BZW7 698 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 SH2D4AQ9H788 454 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 POLD4Q9HCU8 107 aa9.89□□□□□ -0.83
SYNE1-217ENST00000466159 LCA5LO95447 670 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 SREBF1P36956 1147 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 ADAM9Q13443 819 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 Q4G0T1 1027 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 HGSNATQ68CP4 663 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 HAUS3Q68CZ6 603 aa9.88□□□□□ -0.83
SYNE1-217ENST00000466159 STYK1Q6J9G0 422 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms