RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 LIFRP42702 1097 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 LRRC63Q05C16 580 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ITKQ08881 620 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 PDCLQ13371 301 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ARID5BQ14865 1188 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ALKBH5Q6P6C2 394 aaKnown RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 RSPH3Q86UC2 560 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ZNF713Q8N859 430 aaPredicted RBP8.42□□□□□ -1.06
NEDD9-204ENST00000448183 EMILIN3Q9NT22 766 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 ANKFY1Q9P2R3 1169 aa8.42□□□□□ -1.06
NEDD9-204ENST00000448183 MAPK13O15264 365 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 APOEP02649 317 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 CDC25AP30304 524 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ALDH1B1P30837 517 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PPP2R5AQ15172 486 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 NBPF9Q3BBW0 867 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 MB21D1Q8N884 522 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ACCSQ96QU6 501 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 DISC1Q9NRI5 854 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 NRBP2Q9NSY0 501 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PCDHB6Q9Y5E3 794 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PRPF3O43395 683 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 KRT1P04264 644 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PRPSAP1Q14558 356 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 LLGL1Q15334 1064 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PDCD2Q16342 344 aaPredicted RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ARL6IP4Q66PJ3 421 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 KRT80Q6KB66 452 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 RSBN1LQ6PCB5 846 aaPredicted RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 MCUQ8NE86 351 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 TRIM56Q9BRZ2 755 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 WDR11Q9BZH6 1224 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 MRPL46Q9H2W6 279 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 FGFR1OP2Q9NVK5 253 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ADAMTS1Q9UHI8 967 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PACSIN2Q9UNF0 486 aaPredicted RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ANO9A1A5B4 782 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 GYS2P54840 703 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 BASP1P80723 227 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 TNFAIP1Q13829 316 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ZNF449Q6P9G9 518 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 GDAP1Q8TB36 358 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ELAC2Q9BQ52 826 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 AP1M1Q9BXS5 423 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 TMEM206Q9H813 350 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 MAP3K15Q6ZN16 1313 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 GOLGA8CPA6NN73 597 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 CLIC2O15247 247 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 TRPA1O75762 1119 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 RAB44Q7Z6P3 723 aaPredicted RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 SIRT2Q8IXJ6 389 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 ATP6V0A1Q93050 837 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 CCDC138Q96M89 665 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 AS3MTQ9HBK9 375 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 PLAAQ9Y263 795 aa8.41□□□□□ -1.06
NEDD9-204ENST00000448183 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.41□□□□□ -1.06
NEDD9-204ENST00000448183 SPDYE16A6NNV3 312 aaPredicted RBP8.4□□□□□ -1.06
NEDD9-204ENST00000448183 OATP04181 439 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 SRGAP2BP0DMP2 458 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 ACTN1P12814 892 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 PLCG1P19174 1290 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 INPP1P49441 399 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 MXI1P50539 228 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 CACNB1Q02641 598 aaPredicted RBP8.4□□□□□ -1.06
NEDD9-204ENST00000448183 PROSER3Q2NL68 480 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 SPDYE2Q495Y8 402 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 KMT5BQ4FZB7 885 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 LRRC23Q53EV4 343 aaPredicted RBP8.4□□□□□ -1.06
NEDD9-204ENST00000448183 DNAJC24Q6P3W2 148 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 DCLK2Q8N568 766 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 OSBP2Q969R2 916 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 NACC1Q96RE7 527 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 MID2Q9UJV3 735 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 ESYT2A0FGR8 921 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 ANKRD65E5RJM6 399 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 IPO5O00410 1097 aaKnown RBP8.4□□□□□ -1.06
NEDD9-204ENST00000448183 DCTN3O75935 186 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 KPNA2P52292 529 aaKnown RBP8.4□□□□□ -1.06
NEDD9-204ENST00000448183 RHOT2Q8IXI1 618 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 PDIK1LQ8N165 341 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 SERPINI1Q99574 410 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 ANO3Q9BYT9 981 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 TLK1Q9UKI8 766 aa8.4□□□□□ -1.06
NEDD9-204ENST00000448183 KDM5AP29375 1690 aaKnown RBP8.4□□□□□ -1.06
NEDD9-204ENST00000448183 GOLGA8SH3BPF8 625 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 PODXLO00592 558 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 TOM1L1O75674 476 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 BBS9Q3SYG4 887 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 PPP4R3CPQ6ZMV5 832 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 PCGF5Q86SE9 256 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 ARHGEF25Q86VW2 580 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 ST13P4Q8IZP2 240 aaPredicted RBP8.4□□□□□ -1.07
NEDD9-204ENST00000448183 PDLIM2Q96JY6 352 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 PITPNM3Q9BZ71 974 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 OSBPL5Q9H0X9 879 aaPredicted RBP8.4□□□□□ -1.07
NEDD9-204ENST00000448183 UBE2TQ9NPD8 197 aaPredicted RBP8.4□□□□□ -1.07
NEDD9-204ENST00000448183 ATG3Q9NT62 314 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 ZSWIM5Q9P217 1185 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 CCPG1Q9ULG6 757 aa8.4□□□□□ -1.07
NEDD9-204ENST00000448183 AATKQ6ZMQ8 1374 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms