RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SLURP2P0DP57 97 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 EEF2P13639 858 aaKnown RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 MEA1Q16626 185 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 QRICH1Q2TAL8 776 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 TMEM119Q4V9L6 283 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 FAM26FQ5R3K3 315 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 NAIF1Q69YI7 327 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 CACNA2D4Q7Z3S7 1137 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 TSGA10Q9BZW7 698 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 PDGFDQ9GZP0 370 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 PANK4Q9NVE7 773 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 FAM53CQ9NYF3 392 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 ABCB11O95342 1321 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 EIF3CLB5ME19 914 aaKnown RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ICA1Q05084 483 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 RBM26Q5T8P6 1007 aaKnown RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 NIM1KQ8IY84 436 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ERMNQ8TAM6 284 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 CSRNP1Q96S65 589 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 EIF3CQ99613 913 aaKnown RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ANO3Q9BYT9 981 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 KLHL33A6NCF5 533 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 TRAF5O00463 557 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 PPP1R11O60927 126 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ZBTB7AO95365 584 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP11P51784 963 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 HDLBPQ00341 1268 aaKnown RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 CDC37Q16543 378 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ABCB5Q2M3G0 1257 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 WDR59Q6PJI9 974 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 SLFN12Q8IYM2 578 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 MICALL1Q8N3F8 863 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 TXLNBQ8N3L3 684 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 NUDT12Q9BQG2 462 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ZHX3Q9H4I2 956 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 SERPINA10Q9UK55 444 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 ATF5Q9Y2D1 282 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L15C9J2P7 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L13C9JLJ4 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L11C9JVI0 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L18D6R9N7 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L22D6RA61 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L17D6RBQ6 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L19D6RCP7 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L20D6RJB6 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 AKR1B10O60218 316 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 DPEP1P16444 411 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 CLK2P49760 499 aaKnown RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 KLK7P49862 253 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 GSCP56915 257 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 CKAP4Q07065 602 aaKnown RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L24Q0WX57 530 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 LRRC41Q15345 812 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L6PQ6QN14 398 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 TMEM179Q6ZVK1 233 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 CAGE1Q8TC20 777 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 JDP2Q8WYK2 163 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 FAM207AQ9NSI2 230 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-204ENST00000392003 KIAA1024Q9UPX6 916 aa10.66□□□□□ -0.7
COL6A3-204ENST00000392003 BRWD3Q6RI45 1802 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 DDTLA6NHG4 134 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-204ENST00000392003 SLC26A4O43511 780 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 ECEL1O95672 775 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 RHOXF2BP0C7M4 288 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 FKBP3Q00688 224 aaKnown RBP10.65□□□□□ -0.7
COL6A3-204ENST00000392003 COASYQ13057 564 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 AP3B2Q13367 1082 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 MIIPQ5JXC2 388 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 HAUS3Q68CZ6 603 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 RHOXF2Q9BQY4 288 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 MRIQ9BWK5 157 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 AMNQ9BXJ7 453 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 REXO2Q9Y3B8 237 aaKnown RBP10.65□□□□□ -0.7
COL6A3-204ENST00000392003 SAR1BQ9Y6B6 198 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 C10orf71Q711Q0 1435 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 SPDYE3A6NKU9 549 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 PSMD14O00487 310 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 CAPN15O75808 1086 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 HERVK_113P62684 666 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 CDK17Q00537 523 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 GPBP1Q86WP2 473 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 HAS1Q92839 578 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 MKL1Q969V6 931 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 MTMR8Q96EF0 704 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 PRMT6Q96LA8 375 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-204ENST00000392003 TTYH3Q9C0H2 523 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.65□□□□□ -0.7
COL6A3-204ENST00000392003 TRIM10Q9UDY6 481 aa10.65□□□□□ -0.7
COL6A3-204ENST00000392003 FOCADQ5VW36 1801 aa10.65□□□□□ -0.71
COL6A3-204ENST00000392003 LRRC37AA6NMS7 1700 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 ABL1P00519 1130 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 PLA2G4BP0C869 781 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 EPS15P42566 896 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 LONRF2Q1L5Z9 754 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 HERC4Q5GLZ8 1057 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-204ENST00000392003 CCDC70Q6NSX1 233 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 KCNK18Q7Z418 384 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 FBXO11Q86XK2 927 aa10.64□□□□□ -0.71
COL6A3-204ENST00000392003 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-204ENST00000392003 TACC1O75410 805 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms