RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 VCAM1P19320 739 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 KRT9P35527 623 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 KLK7P49862 253 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 TRIM14Q14142 442 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 HERC4Q5GLZ8 1057 aaPredicted RBP13.35□□□□□ -0.27
USP3-202ENST00000380324 NELFCDQ8IXH7 590 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 CCDC65Q8IXS2 484 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 MYOCDQ8IZQ8 938 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 ZNF507Q8TCN5 953 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 LPAR1Q92633 364 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 KIAA1683Q9H0B3 1180 aa13.35□□□□□ -0.27
USP3-202ENST00000380324 PARP14Q460N5 1801 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 TTC26A0AVF1 554 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 ALAS1P13196 640 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 TRIM21P19474 475 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 DNM2P50570 870 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 PRPF38AQ8NAV1 312 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 TRPM4Q8TD43 1214 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 ZKSCAN4Q969J2 545 aaPredicted RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 PCMTD1Q96MG8 357 aaPredicted RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 EIF2AK1Q9BQI3 630 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 NAA15Q9BXJ9 866 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 EHMT1Q9H9B1 1298 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 RAVER2Q9HCJ3 691 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 DNM3Q9UQ16 869 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 GAS7O60861 476 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 CCDC175P0C221 793 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 ETF1P62495 437 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 LRRC63Q05C16 580 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 SPP2Q13103 211 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 PSMD2Q13200 908 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 CTTNQ14247 550 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 SYCP1Q15431 976 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 CEP55Q53EZ4 464 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 ARSHQ5FYA8 562 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 MIIPQ5JXC2 388 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 CCDC51Q96ER9 411 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 WRNIP1Q96S55 665 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 BHMT2Q9H2M3 363 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 MRPL44Q9H9J2 332 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 PKD2L1Q9P0L9 805 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 COL20A1Q9P218 1284 aa13.34□□□□□ -0.27
USP3-202ENST00000380324 COL11A1P12107 1806 aaPredicted RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 POLR2AP24928 1970 aaKnown RBP13.34□□□□□ -0.27
USP3-202ENST00000380324 A0A1W2PQC6 194 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 ERVK-24P63145 666 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 TBC1D8BQ0IIM8 1120 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 TRIM65Q6PJ69 517 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 LRRC55Q6ZSA7 311 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 TSG101Q99816 390 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 REEP2Q9BRK0 252 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 RPAP3Q9H6T3 665 aaPredicted RBP13.33□□□□□ -0.28
USP3-202ENST00000380324 GGA3Q9NZ52 723 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 A0A0U1RQJ8 604 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 DDX39AO00148 427 aaKnown RBP13.33□□□□□ -0.28
USP3-202ENST00000380324 FANCGO15287 622 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 SLC26A4O43511 780 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 PIGOQ8TEQ8 1089 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 ATRIPQ8WXE1 791 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 ZNF577Q9BSK1 485 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 POLD4Q9HCU8 107 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 LZTFL1Q9NQ48 299 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 RABGAP1Q9Y3P9 1069 aa13.33□□□□□ -0.28
USP3-202ENST00000380324 CTIFO43310 598 aaKnown RBP13.32□□□□□ -0.28
USP3-202ENST00000380324 PSMD10O75832 226 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 ARP10275 920 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 MUM1L1Q5H9M0 696 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 FKBP15Q5T1M5 1219 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 DCAF15Q66K64 600 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 OTOP1Q7RTM1 612 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 TPH2Q8IWU9 490 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 ACRBPQ8NEB7 543 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 IL31RAQ8NI17 732 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 RUSC1Q9BVN2 902 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 EMILIN3Q9NT22 766 aa13.32□□□□□ -0.28
USP3-202ENST00000380324 LUC7L2Q9Y383 392 aaKnown RBP13.32□□□□□ -0.28
USP3-202ENST00000380324 CTDP1Q9Y5B0 961 aaPredicted RBP13.32□□□□□ -0.28
USP3-202ENST00000380324 GOLGA6L9A6NEM1 432 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 RSPH10B2B2RC85 870 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 TRAF5O00463 557 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 RSPH10BP0C881 870 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 HSD17B4P51659 736 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 CASP5P51878 434 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 NAA30Q147X3 362 aaPredicted RBP13.31□□□□□ -0.28
USP3-202ENST00000380324 SFR1Q86XK3 245 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 SYT2Q8N9I0 419 aaPredicted RBP13.31□□□□□ -0.28
USP3-202ENST00000380324 CLEC4DQ8WXI8 215 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 SLC5A5Q92911 643 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 DYDC2Q96IM9 177 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 WNK4Q96J92 1243 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 SLC38A10Q9HBR0 1119 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.31□□□□□ -0.28
USP3-202ENST00000380324 ZNF215Q9UL58 517 aaPredicted RBP13.31□□□□□ -0.28
USP3-202ENST00000380324 PCDHA2Q9Y5H9 948 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 ADGRG1Q9Y653 693 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 V9GYY5 206 aaPredicted RBP13.31□□□□□ -0.28
USP3-202ENST00000380324 PHLPP2Q6ZVD8 1323 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 PITPNM2Q9BZ72 1349 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 MYH11P35749 1972 aa13.31□□□□□ -0.28
USP3-202ENST00000380324 GNG11P61952 73 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms