RNA–Protein interactions for RNA: ENST00000379989.6

CDKL5-201, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-201ENST00000379989 PAEPP09466 180 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 FAM153BP0C7A2 387 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 SPATA31D3P0C874 917 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 PBX1P40424 430 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 HDAC4P56524 1084 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 NCALDP61601 193 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 GUCY1B3Q02153 619 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 STK38Q15208 465 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 FAM153CQ494X1 144 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 CEP128Q6ZU80 1094 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 SPATA31D4Q6ZUB0 917 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 CPLX4Q7Z7G2 160 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 PALB2Q86YC2 1186 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 NSUN7Q8NE18 718 aaKnown RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 LZICQ8WZA0 190 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 FAM227BQ96M60 508 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 SAMSN1Q9NSI8 373 aaKnown RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 TLR7Q9NYK1 1049 aaKnown RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 FAM153AQ9UHL3 310 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 RGPD3A6NKT7 1758 aaPredicted RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 RGPD4Q7Z3J3 1758 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 SYNRGQ9UMZ2 1314 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 ECM29Q5VYK3 1845 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 IGF2BP3O00425 579 aaKnown RBP eCLIP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 GNA14O95837 355 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 GYPCP04921 128 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 KRT16P08779 473 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 TNFRSF8P28908 595 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 HOXD12P35452 270 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 SEPT14Q6ZU15 432 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 APTXQ7Z2E3 356 aaKnown RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 TMC4Q7Z404 712 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 FOXP4Q8IVH2 680 aaPredicted RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 TRMT44Q8IYL2 757 aaKnown RBP8.18□□□□□ -1.1
CDKL5-201ENST00000379989 CCDC197Q8NCU1 140 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 SLC4A9Q96Q91 983 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 TMBIM4Q9HC24 238 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 STIM2Q9P246 746 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 WWC3Q9ULE0 1092 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 AFF2P51816 1311 aa8.18□□□□□ -1.1
CDKL5-201ENST00000379989 EIF3FO00303 357 aaPredicted RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 NTSR2O95665 410 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 ZFXP17010 805 aaPredicted RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 YY1P25490 414 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 EXOSC10Q01780 885 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 MEX3CQ5U5Q3 659 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 IQCEQ6IPM2 695 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 TMTC1Q8IUR5 882 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 NCSTNQ92542 709 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 TMEM87BQ96K49 555 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 NLRP3Q96P20 1036 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 MED15Q96RN5 788 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 VCXQ9H320 206 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 ATP8A2Q9NTI2 1148 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 NKX1-2Q9UD57 310 aaPredicted RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 CNOT8Q9UFF9 292 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 NARFQ9UHQ1 456 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 TFR2Q9UP52 801 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 MYH1P12882 1939 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 SPTLC2O15270 562 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 CTDNEP1O95476 244 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 BAG3O95817 575 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 XBP1P17861 261 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 ADD2P35612 726 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 MCL1Q07820 350 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 PPARAQ07869 468 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 SMUG1Q53HV7 270 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 HAUS3Q68CZ6 603 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 DUS1LQ6P1R4 473 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 KCNG4Q8TDN1 519 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 NOC3LQ8WTT2 800 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 UCMAQ8WVF2 138 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 FAM136AQ96C01 138 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 DDX27Q96GQ7 796 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 CARD9Q9H257 536 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 VCX3BQ9H321 246 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 VCX3AQ9NNX9 186 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 ZNHIT6Q9NWK9 470 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 CIDEBQ9UHD4 219 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 ORC4O43929 436 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 RARAP10276 462 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 HARSP12081 509 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 CMA1P23946 247 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 VARSP26640 1264 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 SARSP49591 514 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 RUFY4Q6ZNE9 571 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 METTL16Q86W50 562 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 CNGA4Q8IV77 575 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 PTPRN2Q92932 1015 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.17□□□□□ -1.1
CDKL5-201ENST00000379989 HSFX1Q9UBD0 423 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 TSKSQ9UJT2 592 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 EFR3BQ9Y2G0 817 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 SH3GLB1Q9Y371 365 aa8.17□□□□□ -1.1
CDKL5-201ENST00000379989 LSM1O15116 133 aaKnown RBP8.16□□□□□ -1.1
CDKL5-201ENST00000379989 HSPD1P10809 573 aaKnown RBP8.16□□□□□ -1.1
CDKL5-201ENST00000379989 ACADSP16219 412 aa8.16□□□□□ -1.1
CDKL5-201ENST00000379989 TRPC1P48995 793 aa8.16□□□□□ -1.1
CDKL5-201ENST00000379989 CLPPQ16740 277 aaPredicted RBP8.16□□□□□ -1.1
CDKL5-201ENST00000379989 LRRC24Q50LG9 513 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms