RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ARHGAP18Q8N392 663 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 TBC1D7Q9P0N9 293 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 MAP3K7O43318 606 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 PSMD1Q99460 953 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 TRIM6Q9C030 488 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF827Q17R98 1081 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 NELFCDQ8IXH7 590 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF512BQ96KM6 892 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 KIAA1586Q9HCI6 787 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 ROBO2Q9HCK4 1378 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 PNMA6FA0A0J9YX94 578 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 EIF4A3P38919 411 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 COG1Q8WTW3 980 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 SLC5A4Q9NY91 659 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 DONSONQ9NYP3 566 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 DIP2CQ9Y2E4 1556 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF233A6NK53 670 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ODR4Q5SWX8 454 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 FAM160B1Q5W0V3 765 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 KLHL29Q96CT2 875 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 CHRNA3P32297 505 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 TFDP1Q14186 410 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 LRIG3Q6UXM1 1119 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 CENPUQ71F23 418 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 TTC13Q8NBP0 860 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ABCB6Q9NP58 842 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 VWDEQ8N2E2 1590 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ARHGAP42A6NI28 874 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 CHRNDQ07001 517 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 OPHN1O60890 802 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 A1BGP04217 495 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 PLCG1P19174 1290 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 STOML1Q9UBI4 398 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ZBTB21Q9ULJ3 1066 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 CCDC93Q567U6 631 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 PIP4K2CQ8TBX8 421 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 RBM41Q96IZ5 413 aaKnown RBP11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 MOV10L1Q9BXT6 1211 aaKnown RBP11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 TRIM15Q9C019 465 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 BATF3Q9NR55 127 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ANAPC5Q9UJX4 755 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 PIK3CAP42336 1068 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 SPARCL1Q14515 664 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 PRPSAP1Q14558 356 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 SEPT14Q6ZU15 432 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 MAPKAPK5Q8IW41 473 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 TEX2Q8IWB9 1127 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 NPHP4O75161 1426 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 FAM187AA6NFU0 413 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 TJP3O95049 919 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 PTPN12Q05209 780 aaKnown RBP11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ARHGAP44Q17R89 818 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 CCDC68Q9H2F9 335 aa11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-202ENST00000336838 ARHGEF37A1IGU5 675 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 MAPK4P31152 587 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 RASA3Q14644 834 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 EXOC1LA0A1B0GW35 172 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 SMIM24O75264 130 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ICA1Q05084 483 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ENOSF1Q7L5Y1 443 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 MGARPQ8TDB4 240 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 DTNBP1Q96EV8 351 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 IFT172Q9UG01 1749 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 XPOTO43592 962 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 MSH2P43246 934 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 NAALADL2Q58DX5 795 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 SLFN12LQ6IEE8 588 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ARMCX5Q6P1M9 558 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 RASGRP2Q7LDG7 609 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 TAF1DQ9H5J8 278 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 STRIP2Q9ULQ0 834 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ORC6Q9Y5N6 252 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 SPATA31D1Q6ZQQ2 1576 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 IFNB1P01574 187 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 TRIM72Q6ZMU5 477 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 CCDC124Q96CT7 223 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ATP8A1Q9Y2Q0 1164 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 CD2APQ9Y5K6 639 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 GUCY2CP25092 1073 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 DYNC1I2Q13409 638 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 PFKFB3Q16875 520 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 CERKLQ49MI3 558 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 CTAGE3PQ8IX95 158 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ST13P4Q8IZP2 240 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 PDIK1LQ8N165 341 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ANKRD42Q8N9B4 389 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 CASZ1Q86V15 1759 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ABCB11O95342 1321 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 TTC4O95801 387 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 KMT5BQ4FZB7 885 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 NME8Q8N427 588 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.11□□□□□ -0.637e-12■□□□□ 8.9
CCDC88A-202ENST00000336838 SERPINA10Q9UK55 444 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 PNPLA7Q6ZV29 1317 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 A0A1B0GTH6 734 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ATP6V1G3Q96LB4 118 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 HESX1Q9UBX0 185 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF148Q9UQR1 794 aa11.11□□□□□ -0.63
CCDC88A-202ENST00000336838 UBE4BO95155 1302 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms