RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 KPNA7A9QM74 516 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 GCFC2P16383 781 aaKnown RBP15.36■□□□□ 0.05
COL7A1-201ENST00000328333 LIG4P49917 911 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 NLRX1Q86UT6 975 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 SKA2Q8WVK7 121 aaPredicted RBP15.36■□□□□ 0.05
COL7A1-201ENST00000328333 LZICQ8WZA0 190 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 ADPGKQ9BRR6 497 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 NINQ8N4C6 2090 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 C16orf96A6NNT2 1141 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 MAPK4P31152 587 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 TCP11X2Q5H9J9 407 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 NUGGCQ68CJ6 796 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 DEPTORQ8TB45 409 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 DTX3LQ8TDB6 740 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 PCDHA7Q9UN72 937 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 PCDHA12Q9UN75 941 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 ATP8B3O60423 1300 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 IRS4O14654 1257 aaPredicted RBP15.36■□□□□ 0.05
COL7A1-201ENST00000328333 HSPA13P48723 471 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 TSC22D4Q9Y3Q8 395 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 K7ENM7 598 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 SEC24BO95487 1268 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 ZSCAN10Q96SZ4 725 aaPredicted RBP15.35■□□□□ 0.05
COL7A1-201ENST00000328333 DDX25Q9UHL0 483 aaKnown RBP15.35■□□□□ 0.05
COL7A1-201ENST00000328333 ZNF229Q9UJW7 825 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 NDUFA10O95299 355 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 RFX1P22670 979 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 CYP2J2P51589 502 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 SARM1Q6SZW1 724 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 HORMAD1Q86X24 394 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL7A1-201ENST00000328333 GRIN2AQ12879 1464 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 TCOF1Q13428 1488 aaKnown RBP15.35■□□□□ 0.05
COL7A1-201ENST00000328333 TTBK2Q6IQ55 1244 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 PLBD2Q8NHP8 589 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 TBC1D7Q9P0N9 293 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 NIP7Q9Y221 180 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL7A1-201ENST00000328333 GOLGA8JA6NMD2 632 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 E2F6O75461 281 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 TOM1L1O75674 476 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 DAB2IPQ5VWQ8 1189 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 ZNF653Q96CK0 615 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 ZSWIM6Q9HCJ5 1215 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 KDRP35968 1356 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 SLC39A14Q15043 492 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 KLC2Q9H0B6 622 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 PMLP29590 882 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 NDUFA8P51970 172 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 POLR2FP61218 127 aaKnown RBP15.35■□□□□ 0.05
COL7A1-201ENST00000328333 IL1RL1Q01638 556 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 JDP2Q8WYK2 163 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 ZBTB9Q96C00 473 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 NT5C1BQ96P26 610 aa15.35■□□□□ 0.05
COL7A1-201ENST00000328333 ABCF3Q9NUQ8 709 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 SLC5A4Q9NY91 659 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 H7C0C1 242 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 ATP5OP48047 213 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 SPOPLQ6IQ16 392 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 WAPLQ7Z5K2 1190 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 DEPDC1BQ8WUY9 529 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 ATP6V1E2Q96A05 226 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 TTC37Q6PGP7 1564 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PLS3P13797 630 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PPP2R2AP63151 447 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PYROXD1Q8WU10 500 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 OPTNQ96CV9 577 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PKD2L2Q9NZM6 624 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 TRAF3IP3Q9Y228 551 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 XPOTO43592 962 aaKnown RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 NCF2P19878 526 aaPredicted RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 RANBP1P43487 201 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 C16orf71Q8IYS4 520 aaPredicted RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PROM2Q8N271 834 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 AFPP02771 609 aaKnown RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 ARL4CP56559 192 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 KPNB1Q14974 876 aaKnown RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PPM1KQ8N3J5 372 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 ZCRB1Q8TBF4 217 aaKnown RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 SCG3Q8WXD2 468 aaKnown RBP15.34■□□□□ 0.05
COL7A1-201ENST00000328333 LPIN2Q92539 896 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 UHRF1BP1LA0JNW5 1464 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 MYOM2P54296 1465 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PDHA1P08559 390 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 SERPINB1P30740 379 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 ACEP12821 1306 aa15.34■□□□□ 0.05
COL7A1-201ENST00000328333 PATL1Q86TB9 770 aaKnown RBP15.33■□□□□ 0.05
COL7A1-201ENST00000328333 GPATCH8Q9UKJ3 1502 aaKnown RBP15.33■□□□□ 0.05
COL7A1-201ENST00000328333 PIK3R2O00459 728 aa15.33■□□□□ 0.05
COL7A1-201ENST00000328333 GGPS1O95749 300 aa15.33■□□□□ 0.05
COL7A1-201ENST00000328333 ZNF654Q8IZM8 581 aa15.33■□□□□ 0.05
COL7A1-201ENST00000328333 DENND4BO75064 1496 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 RASA4BC9J798 803 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 RASA4O43374 803 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 NR2F2P24468 414 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 MAP4P27816 1152 aaKnown RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 ZNF658Q5TYW1 1059 aaPredicted RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 KDM5CP41229 1560 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 MAP2P11137 1827 aaKnown RBP15.33■□□□□ 0.04
COL7A1-201ENST00000328333 RSPH10B2B2RC85 870 aa15.33■□□□□ 0.04
COL7A1-201ENST00000328333 RSPH10BP0C881 870 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms