RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TKFCQ3LXA3 575 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 CT47A1Q5JQC4 288 aaPredicted RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 APTXQ7Z2E3 356 aaKnown RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 HSD17B14Q9BPX1 270 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 UNC45AQ9H3U1 944 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 UBIAD1Q9Y5Z9 338 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 LOC285556D6RIA3 1793 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 ZBTB39O15060 712 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 GAS7O60861 476 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 SERPINC1P01008 464 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 MYCLP12524 364 aaPredicted RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 UBASH3AP57075 661 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 RAD51AP2Q09MP3 1159 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 LRMPQ12912 555 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 ITGB3BPQ13352 177 aaPredicted RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 PPP2R5CQ13362 524 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 CTTNQ14247 550 aaKnown RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 ARSHQ5FYA8 562 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 B3GNT9Q6UX72 402 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 PNMA8AQ86V59 439 aaPredicted RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 ZNF408Q9H9D4 720 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 SLC39A2Q9NP94 309 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 A1CFQ9NQ94 594 aaKnown RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 EXOC1Q9NV70 894 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 MAP3K20Q9NYL2 800 aaKnown RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 WRAP73Q9P2S5 460 aaPredicted RBP20.59■□□□□ 0.89
USP39-201ENST00000323701 RWDD2AQ9UIY3 292 aa20.59■□□□□ 0.89
USP39-201ENST00000323701 DDX39AO00148 427 aaKnown RBP20.58■□□□□ 0.89
USP39-201ENST00000323701 DHX15O43143 795 aaKnown RBP20.58■□□□□ 0.89
USP39-201ENST00000323701 SLC12A3P55017 1021 aa20.58■□□□□ 0.89
USP39-201ENST00000323701 CDKAL1Q5VV42 579 aa20.58■□□□□ 0.89
USP39-201ENST00000323701 HAUS3Q68CZ6 603 aa20.58■□□□□ 0.89
USP39-201ENST00000323701 LBX2Q6XYB7 198 aa20.58■□□□□ 0.89
USP39-201ENST00000323701 FILIP1Q7Z7B0 1213 aa20.58■□□□□ 0.89
USP39-201ENST00000323701 KCNH4Q9UQ05 1017 aa20.58■□□□□ 0.89
USP39-201ENST00000323701 MYPNQ86TC9 1320 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 SLITRK3O94933 977 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 IDEP14735 1019 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 EHHADHQ08426 723 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 PABPC4Q13310 644 aaKnown RBP eCLIP20.58■□□□□ 0.881e-7■■■□□ 14.9
USP39-201ENST00000323701 LDLRAD1Q5T700 205 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 UNC13DQ70J99 1090 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 CYP39A1Q9NYL5 469 aa20.58■□□□□ 0.88
USP39-201ENST00000323701 CYP11B2P19099 503 aa20.57■□□□□ 0.88
USP39-201ENST00000323701 HOXA7P31268 230 aaPredicted RBP20.57■□□□□ 0.88
USP39-201ENST00000323701 SETQ01105 290 aaPredicted RBP20.57■□□□□ 0.88
USP39-201ENST00000323701 CNNM4Q6P4Q7 775 aa20.57■□□□□ 0.88
USP39-201ENST00000323701 EEF2KMTQ96G04 330 aa20.57■□□□□ 0.88
USP39-201ENST00000323701 DYDC2Q96IM9 177 aa20.57■□□□□ 0.88
USP39-201ENST00000323701 FGFBP2Q9BYJ0 223 aa20.57■□□□□ 0.88
USP39-201ENST00000323701 ATP9AO75110 1047 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 CDK11BP21127 795 aaKnown RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 PPIL2Q13356 520 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 ARHGEF16Q5VV41 709 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 GPBP1Q86WP2 473 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 PROCA1Q8NCQ7 364 aaPredicted RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 ERMNQ8TAM6 284 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 PIGOQ8TEQ8 1089 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 CACTINQ8WUQ7 758 aaKnown RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 POLR3CQ9BUI4 534 aaPredicted RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 ASCC2Q9H1I8 757 aaPredicted RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 BCAS3Q9H6U6 928 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 AGO4Q9HCK5 861 aaKnown RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 POLD4Q9HCU8 107 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 JADE2Q9NQC1 790 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 PNMA2Q9UL42 364 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 LCTP09848 1927 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 ASTN1O14525 1302 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 CXCL11O14625 94 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 BCRP11274 1271 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 C17orf53Q8N3J3 647 aaPredicted RBP20.56■□□□□ 0.88
USP39-201ENST00000323701 SAMD3Q8N6K7 520 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 ACAD9Q9H845 621 aa20.56■□□□□ 0.88
USP39-201ENST00000323701 PVALEFA0A1B0GWK0 134 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 MTMR1Q13613 665 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 TMC6Q7Z403 805 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 IRF2BP1Q8IU81 584 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 RRAGCQ9HB90 399 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 PYCARDQ9ULZ3 195 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 RABGAP1Q9Y3P9 1069 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 A0A0G2JMZ2 1700 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 CNMDO75829 334 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 RGS20O76081 388 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 FSTL1Q12841 308 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 LRRC41Q15345 812 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 ARMC9Q7Z3E5 817 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 TPH2Q8IWU9 490 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 TXNRD2Q9NNW7 524 aa20.55■□□□□ 0.88
USP39-201ENST00000323701 GOLGA6L6A8MZA4 724 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 NR3C2P08235 984 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 COASYQ13057 564 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 GPAT2Q6NUI2 795 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 TTI2Q6NXR4 508 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 NIPA1Q7RTP0 329 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 VSIG10LQ86VR7 867 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 RIT2Q99578 217 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 DUSP9Q99956 384 aaKnown RBP20.54■□□□□ 0.88
USP39-201ENST00000323701 BHMT2Q9H2M3 363 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 TBC1D7Q9P0N9 293 aa20.54■□□□□ 0.88
USP39-201ENST00000323701 DNM3Q9UQ16 869 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms