RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 GOLGA8FQ08AF8 430 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 GOLGA8DPQ0D2H9 430 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PWP2Q15269 919 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 EDRF1Q3B7T1 1238 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ARL13BQ3SXY8 428 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ZNF557Q8N988 423 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 VPS39Q96JC1 886 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MCCC1Q96RQ3 725 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 NUP85Q9BW27 656 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PLA2G12BQ9BX93 195 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ADAMTS13Q76LX8 1427 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 TTC4O95801 387 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CLCN2P51788 898 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 KLHL38Q2WGJ6 581 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PREPLQ4J6C6 727 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 FAM160B2Q86V87 743 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 NLGN1Q8N2Q7 840 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PA2G4Q9UQ80 394 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 EPN1Q9Y6I3 576 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 PDE8BO95263 885 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 C7orf57Q8NEG2 295 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 TADA1Q96BN2 335 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 TBC1D22BQ9NU19 505 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 A0A087WUV0 522 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 CHUKO15111 745 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 KRT7P08729 469 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 LAMC2Q13753 1193 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 ZSCAN26Q16670 478 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 CAPRIN2Q6IMN6 1127 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 MYOCDQ8IZQ8 938 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 SCG3Q8WXD2 468 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 CCDC127Q96BQ5 260 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 TRIM4Q9C037 500 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 CHPF2Q9P2E5 772 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 OR52Z1P0C646 297 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 HARSP12081 509 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 HOXC9P31274 260 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 LARP4BQ92615 738 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 NFE2L3Q9Y4A8 694 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 PITPNM2Q9BZ72 1349 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 ADGRB1O14514 1584 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 TRAF5O00463 557 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 DAPK3O43293 454 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 LMOD1P29536 600 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 SLC1A4P43007 532 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 KRT35Q92764 455 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 KIFC2Q96AC6 838 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 MRPL44Q9H9J2 332 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 ADGRA3Q8IWK6 1321 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 ZBTB24O43167 697 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 PSMD3O43242 534 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 PRPF3O43395 683 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 ZBED4O75132 1171 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 UGP2Q16851 508 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 RCOR1Q9UKL0 485 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 JCADQ9P266 1359 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 MYOM1P52179 1685 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 TMCC1O94876 653 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 FIGNQ5HY92 759 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 KDM1AO60341 852 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 CALB1P05937 261 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 MMEP08473 750 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 SCG2P13521 617 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 POLD1P28340 1107 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 MAGEA9P43362 315 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 HSP90AA4PQ58FG1 418 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 LPAR1Q92633 364 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 RBM42Q9BTD8 480 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 DDX56Q9NY93 547 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 SLIT3O75094 1523 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 CNKSR1Q969H4 720 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 ZNF622Q969S3 477 aaKnown RBP eCLIP4.34□□□□□ -1.71
USH2A-201ENST00000307340 TMEM60Q9H2L4 133 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 IVNS1ABPQ9Y6Y0 642 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 PYGLP06737 847 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 DNM1Q05193 864 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 CCDC105Q8IYK2 499 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 SPATA5Q8NB90 893 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 OTUB1Q96FW1 271 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 MRFAP1Q9Y605 127 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 VSIG1Q86XK7 387 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 KRT12Q99456 494 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 DDX50Q9BQ39 737 aaKnown RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 SCOCQ9UIL1 159 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 ARHGEF35A5YM69 484 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 NCAM2O15394 837 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 FAM178BQ8IXR5 827 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 TOPORSQ9NS56 1045 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 STARD13Q9Y3M8 1113 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 SPOPO43791 374 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 GARTP22102 1010 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 HDAC4P56524 1084 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 COPS6Q7L5N1 327 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 NLRP7Q8WX94 980 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 IFT81Q8WYA0 676 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 PLEKHF1Q96S99 279 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 AMNQ9BXJ7 453 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 TRIM55Q9BYV6 548 aa4.34□□□□□ -1.71
USH2A-201ENST00000307340 ROPN1BQ9BZX4 212 aaPredicted RBP4.34□□□□□ -1.71
USH2A-201ENST00000307340 TRIM6Q9C030 488 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms