RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CNTRLQ7Z7A1 2325 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SLC16A3O15427 465 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PPIP5K2O43314 1243 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 TMCC1O94876 653 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 MMEP08473 750 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 HK2P52789 917 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 COPB1P53618 953 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 LONRF3Q496Y0 759 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 RESP18Q5W5W9 173 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 DIS3L2Q8IYB7 885 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 L3MBTL3Q96JM7 780 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SLC26A6Q9BXS9 759 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 IL1RAPL2Q9NP60 686 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 DNAJC17Q9NVM6 304 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 CEP72Q9P209 647 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PI4KAP2A4QPH2 592 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 CFAP69A5D8W1 941 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SPDYE2BA6NHP3 402 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 AHCYL1O43865 530 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SPDYE6P0CI01 402 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 DDX5P17844 614 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 AP3M2P53677 418 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 MYBPC2Q14324 1141 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PI4KAP1Q8N8J0 262 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 KIAA1586Q9HCI6 787 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PDE11AQ9HCR9 933 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 MRPL47Q9HD33 250 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ZNF277Q9NRM2 450 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 LIMA1Q9UHB6 759 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 AP3M1Q9Y2T2 418 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 COL4A3BPQ9Y5P4 624 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SPDYE16A6NNV3 312 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ERVV-2B6SEH9 535 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 MYL4P12829 197 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 GARSP41250 739 aaKnown RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 STAT4Q14765 748 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SLC9A5Q14940 896 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SPDYE2Q495Y8 402 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 PPP6R3Q5H9R7 873 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-201ENST00000303395 ZMYM1Q5SVZ6 1142 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 MAP7D3Q8IWC1 876 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 HACE1Q8IYU2 909 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 KLHL29Q96CT2 875 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 SPATA31D1Q6ZQQ2 1576 aa5.66□□□□□ -1.5
SCN1A-201ENST00000303395 A0A1B0GTH6 734 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ARHGEF37A1IGU5 675 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 NDUFA10O95299 355 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 MMP14P50281 582 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 LRRC8BQ6P9F7 803 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 XPO6Q96QU8 1125 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 BRIP1Q9BX63 1249 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 PARD6BQ9BYG5 372 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 EPS8L2Q9H6S3 715 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 PRDM10Q9NQV6 1147 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 GRIN1Q05586 938 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 KLC1Q07866 573 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 STK3Q13188 491 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 PLS1Q14651 629 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 EDRF1Q3B7T1 1238 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 GPATCH4Q5T3I0 446 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 KAZNQ674X7 775 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 TXNDC2Q86VQ3 553 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 UIMC1Q96RL1 719 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 FMO2Q99518 471 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 RIOK1Q9BRS2 568 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 GPHNQ9NQX3 736 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 TRIM33Q9UPN9 1127 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ANKRD26Q9UPS8 1709 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 GLI2P10070 1586 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 TULP4Q9NRJ4 1543 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 RESTQ13127 1097 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 PARP9Q8IXQ6 854 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ZFRQ96KR1 1074 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 TRIM56Q9BRZ2 755 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 CNOT7Q9UIV1 285 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ARL2BPQ9Y2Y0 163 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 LMTK3Q96Q04 1460 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 FAM237AA0A1B0GTK4 181 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 KANSL1LA0AUZ9 987 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 TYW5A2RUC4 315 aaKnown RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 CDH16O75309 829 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 KRT37O76014 449 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ACTN1P12814 892 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 MAP3K10Q02779 954 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 CYLC2Q14093 348 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 MORC3Q14149 939 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ATAD3BQ5T9A4 648 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ARMC3Q5W041 872 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 PCNX4Q63HM2 1172 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 ANO5Q75V66 913 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 MYOCDQ8IZQ8 938 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 BOLA2Q9H3K6 86 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 CXorf56Q9H5V9 222 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 FAM124BQ9H5Z6 455 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-201ENST00000303395 LZTFL1Q9NQ48 299 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 KLC4Q9NSK0 619 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 RIPOR2Q9Y4F9 1068 aa5.65□□□□□ -1.5
SCN1A-201ENST00000303395 SLC1A1P43005 524 aa5.65□□□□□ -1.51
SCN1A-201ENST00000303395 GUF1Q8N442 669 aaKnown RBP5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms