RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ERMNQ8TAM6 284 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 P2RX5Q93086 422 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 CCDC28BQ9BUN5 200 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 TRIM8Q9BZR9 551 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 DENND2AQ9ULE3 1009 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ZNF652Q9Y2D9 606 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 GTPBP10A4D1E9 387 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 VASPP50552 380 aaPredicted RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 PPP2R5DQ14738 602 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 TMEM259Q4ZIN3 620 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 DTNBP1Q96EV8 351 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 SGSM3Q96HU1 749 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 SLF1Q9BQI6 1058 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 TRIM31Q9BZY9 425 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 LMO7Q8WWI1 1683 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 PHRF1Q9P1Y6 1649 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 FAM187AA6NFU0 413 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 MIF4GDA9UHW6 222 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 I3L4J1 428 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 NAA30Q147X3 362 aaPredicted RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 TOGARAM2Q6ZUX3 1019 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 DPH6Q7L8W6 267 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 TLK2Q86UE8 772 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 IFNL3Q8IZI9 196 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 TMCO5AQ8N6Q1 288 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 OSBP2Q969R2 916 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 STRBPQ96SI9 672 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 NOC4LQ9BVI4 516 aaKnown RBP6.96□□□□□ -1.3
VPS35-201ENST00000299138 SH2D4AQ9H788 454 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ATP8A2Q9NTI2 1148 aa6.96□□□□□ -1.3
VPS35-201ENST00000299138 ESYT2A0FGR8 921 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 GGPS1O95749 300 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 PARP1P09874 1014 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 ATXN8OSP0DMR3 200 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 LRRC31Q6UY01 552 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 PLEKHA4Q9H4M7 779 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 CAPN9O14815 690 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 MAP3K21Q5TCX8 1036 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 NXNQ6DKJ4 435 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 ATG9AQ7Z3C6 839 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 ARL10Q8N8L6 244 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 EIF4E1BA6NMX2 242 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 PDE8BO95263 885 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 BYSLQ13895 437 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 CCDC85BQ15834 202 aaPredicted RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 TBC1D10BQ4KMP7 808 aaPredicted RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 IFIT1BQ5T764 474 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 RBM26Q5T8P6 1007 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 RAD9BQ6WBX8 426 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 ILDR1Q86SU0 546 aaPredicted RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 FAM81BQ96LP2 452 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 LRRC2Q9BYS8 371 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 BCAP29Q9UHQ4 241 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 ATP6V0A2Q9Y487 856 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 DISP2A7MBM2 1401 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 SCG2P13521 617 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 CASP7P55210 303 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 ICA1Q05084 483 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 PDIA6Q15084 440 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 CAVIN4Q5BKX8 364 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 SV2BQ7L1I2 683 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 NLRP9Q7RTR0 991 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 MAP7D3Q8IWC1 876 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 PURBQ96QR8 312 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 SYTL2Q9HCH5 934 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 POTEFA5A3E0 1075 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 SASH3O75995 380 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 POTEIP0CG38 1075 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 HSPA9P38646 679 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 ATP1A2P50993 1020 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 UBE3AQ05086 875 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 NKX1-1Q15270 411 aaPredicted RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 RPS6KA1Q15418 735 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 POTEEQ6S8J3 1075 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 TUBGCP2Q9BSJ2 902 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 TRIM6Q9C030 488 aaPredicted RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 CXorf56Q9H5V9 222 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 MRPL44Q9H9J2 332 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 DIABLOQ9NR28 239 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 TLR7Q9NYK1 1049 aaKnown RBP6.95□□□□□ -1.3
VPS35-201ENST00000299138 CEP72Q9P209 647 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 NRXN3Q9Y4C0 1643 aa6.95□□□□□ -1.3
VPS35-201ENST00000299138 BTBD18B2RXH4 712 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 NTRK3Q16288 839 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 CCDC197Q8NCU1 140 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 GIMAP8Q8ND71 665 aaPredicted RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 FBXO41Q8TF61 875 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 CENPKQ9BS16 269 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 CARD10Q9BWT7 1032 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 KRT82Q9NSB4 513 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 TMOD3Q9NYL9 352 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 TMA7Q9Y2S6 64 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 SETD1AO15047 1707 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 DEUP1Q05D60 604 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 NONOQ15233 471 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS35-201ENST00000299138 KRT79Q5XKE5 535 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 NLRP7Q8WX94 980 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 SDCCAG3Q96C92 435 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 DRC3Q9H069 523 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 ATP6V0A4Q9HBG4 840 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms