RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 ATL2Q8NHH9 583 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 TRMT2BQ96GJ1 504 aaKnown RBP5.53□□□□□ -1.52
CD44-202ENST00000278385 TTC14Q96N46 770 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 HERPUD2Q9BSE4 406 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 SELENOOQ9BVL4 669 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 USP25Q9UHP3 1055 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 FBXO2Q9UK22 296 aaPredicted RBP5.53□□□□□ -1.52
CD44-202ENST00000278385 HFM1A2PYH4 1435 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 ZFYVE9O95405 1425 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 UNC13BO14795 1591 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 SYNMO15061 1565 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 UBR1Q8IWV7 1749 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 TMEM94Q12767 1356 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 PIK3R4Q99570 1358 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 ADGRB3O60242 1522 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 PIK3C2BO00750 1634 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 KDM2BQ8NHM5 1336 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 PITPNM2Q9BZ72 1349 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 NCOA3Q9Y6Q9 1424 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 KLRG2A4D1S0 409 aaPredicted RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 PRR33A8MZF0 331 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 TNFRSF10CO14798 259 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 PRPF3O43395 683 aaKnown RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 PDE8AO60658 829 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 RRM1P23921 792 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 GUCY2CP25092 1073 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 NEK3P51956 506 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 PICALMQ13492 652 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 ALDH1L2Q3SY69 923 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 WWC2Q6AWC2 1192 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 CCDC81Q6ZN84 652 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 MORC1Q86VD1 984 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 CREG2Q8IUH2 290 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 AFAP1L2Q8N4X5 818 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 TAB3Q8N5C8 712 aaPredicted RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 UBR7Q8N806 425 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 DTWD2Q8NBA8 298 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 RBBP8NLQ8NC74 664 aaPredicted RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 PPP1R13LQ8WUF5 828 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 SMARCC1Q92922 1105 aaPredicted RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 MPHOSPH9Q99550 1183 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 LRRC27Q9C0I9 530 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 C19orf44Q9H6X5 657 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 ATP13A1Q9HD20 1204 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 PAK6Q9NQU5 681 aaPredicted RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 PUF60Q9UHX1 559 aaKnown RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 DUSP13Q9UII6 198 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 NOB1Q9ULX3 412 aaKnown RBP5.52□□□□□ -1.53
CD44-202ENST00000278385 RABGAP1Q9Y3P9 1069 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 PCDHB12Q9Y5F1 795 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 TET3O43151 1660 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 IQGAP1P46940 1657 aa5.52□□□□□ -1.53
CD44-202ENST00000278385 POLR1AO95602 1720 aaPredicted RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 FAM135BQ49AJ0 1406 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 KDM5AP29375 1690 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 FAM86C2PA6NEL3 165 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 DIAPH1O60610 1272 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 DNAJA2O60884 412 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 RFPL1O75677 317 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 NBPF7P0C2Y1 421 aaPredicted RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 RBP3P10745 1247 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 RAC2P15153 192 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 FUT4P22083 530 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 POLR2BP30876 1174 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 HALP42357 657 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 NOL9Q5SY16 702 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 NBPF12Q5TAG4 269 aaPredicted RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 PDXDC1Q6P996 788 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 ZNF574Q6ZN55 896 aaPredicted RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 SPRED2Q7Z698 418 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 PASD1Q8IV76 773 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 ABI1Q8IZP0 508 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 FAM169BQ8N8A8 192 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 PJA1Q8NG27 643 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 IPO4Q8TEX9 1081 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 ATXN2LQ8WWM7 1075 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 SKA1Q96BD8 255 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 HOOK2Q96ED9 719 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 MPP4Q96JB8 637 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 SLC6A18Q96N87 628 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 GPR101Q96P66 508 aaPredicted RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 STRBPQ96SI9 672 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 DSCC1Q9BVC3 393 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 SARGQ9BW04 601 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 GPR62Q9BZJ7 368 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 ANTXR1Q9H6X2 564 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 CARS2Q9HA77 564 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 RC3H2Q9HBD1 1191 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 OBP2AQ9NY56 170 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 C9orf78Q9NZ63 289 aaPredicted RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 ST14Q9Y5Y6 855 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 OAS3Q9Y6K5 1087 aaKnown RBP5.51□□□□□ -1.53
CD44-202ENST00000278385 MSH6P52701 1360 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 IQGAP3Q86VI3 1631 aa5.51□□□□□ -1.53
CD44-202ENST00000278385 ADAMTS13Q76LX8 1427 aa5.5□□□□□ -1.53
CD44-202ENST00000278385 RASSF10A6NK89 507 aa5.5□□□□□ -1.53
CD44-202ENST00000278385 TTC36A6NLP5 189 aa5.5□□□□□ -1.53
CD44-202ENST00000278385 PRSS47A8MTI9 375 aa5.5□□□□□ -1.53
CD44-202ENST00000278385 IRS4O14654 1257 aaPredicted RBP5.5□□□□□ -1.53
CD44-202ENST00000278385 CBFA2T2O43439 604 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms