RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 SUPT20HL1Q3ZLR7 823 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 CACYBPQ9HB71 228 aaKnown RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 ABCC12Q96J65 1359 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 GOLGA8KD6RF30 607 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 CLTAP09496 248 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 DNAAF3Q8N9W5 541 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 INPP5FQ9Y2H2 1132 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 TSPOAP1O95153 1857 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 RFC1P35251 1148 aaPredicted RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 EIF4A3P38919 411 aaKnown RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 MUM1Q2TAK8 710 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 SLC44A5Q8NCS7 719 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 TRIM56Q9BRZ2 755 aaKnown RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 AP1M1Q9BXS5 423 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 EEF1GP26641 437 aaKnown RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 PDE1CQ14123 709 aaPredicted RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 CFAP61Q8NHU2 1237 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 TYW1Q9NV66 732 aaKnown RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 SETD1BQ9UPS6 1966 aaKnown RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 LRRC8CQ8TDW0 803 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 PARD3BQ8TEW8 1205 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 PAGE5Q96GU1 130 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 DHTKD1Q96HY7 919 aaPredicted RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 ANAPC5Q9UJX4 755 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 ERVK-7P63135 1459 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 LAD1O00515 517 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 MAN2A1Q16706 1144 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 MMEL1Q495T6 779 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 GBP7Q8N8V2 638 aaPredicted RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 G3BP2Q9UN86 482 aaKnown RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 USP6P35125 1406 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 A0A1B0GUA9 196 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 TMED2Q15363 201 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 KIAA1841Q6NSI8 718 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 BHMT2Q9H2M3 363 aa20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.27■□□□□ 0.846e-8■■■□□ 19.2
SMARCC1-201ENST00000254480 ADD3Q9UEY8 706 aaKnown RBP20.27■□□□□ 0.84
SMARCC1-201ENST00000254480 USP17L5A8MUK1 530 aa20.27■□□□□ 0.83
SMARCC1-201ENST00000254480 HEXIM1O94992 359 aaKnown RBP20.27■□□□□ 0.83
SMARCC1-201ENST00000254480 GRAPQ13588 217 aa20.27■□□□□ 0.83
SMARCC1-201ENST00000254480 CCDC38Q502W7 563 aa20.27■□□□□ 0.83
SMARCC1-201ENST00000254480 GRAPLQ8TC17 118 aaPredicted RBP20.27■□□□□ 0.83
SMARCC1-201ENST00000254480 WDR11Q9BZH6 1224 aa20.27■□□□□ 0.83
SMARCC1-201ENST00000254480 ATP1A3P13637 1013 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 PEX3P56589 373 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 HEXIM2Q96MH2 286 aaKnown RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 SLFN14P0C7P3 912 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 CCDC93Q567U6 631 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 MAP7D3Q8IWC1 876 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 PRPF31Q8WWY3 499 aaKnown RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 TDRD3Q9H7E2 651 aaKnown RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 PALLDQ8WX93 1383 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 NLRP1Q9C000 1473 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 WDR91A4D1P6 747 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 CLGNO14967 610 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 ZNF18P17022 549 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 TRAPPC10P48553 1259 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 FKBP3Q00688 224 aaKnown RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 KCTD6Q8NC69 237 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 BANK1Q8NDB2 785 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 NPHP4O75161 1426 aaPredicted RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 ZSCAN20P17040 1043 aaPredicted RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 PRPSAP1Q14558 356 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 TCP11X2Q5H9J9 407 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 UBE2Q2Q8WVN8 375 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 NHEJ1Q9H9Q4 299 aaPredicted RBP20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 PARVGQ9HBI0 331 aa20.26■□□□□ 0.83
SMARCC1-201ENST00000254480 GAP43P17677 238 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 KIF11P52732 1056 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 DALRD3Q5D0E6 543 aaKnown RBP20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 AK8Q96MA6 479 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 XPAP23025 273 aaPredicted RBP20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 NFX1Q12986 1120 aaKnown RBP20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 DARS2Q6PI48 645 aaKnown RBP20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 CFAP36Q96G28 342 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 ZWILCHQ9H900 591 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 A6NNZ2 444 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 CCT5P48643 541 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 TUBB8Q3ZCM7 444 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 NEDD4P46934 1319 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 FAM83BQ5T0W9 1011 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 ARMC9Q7Z3E5 817 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 THNSL1Q8IYQ7 743 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 OSBPL3Q9H4L5 887 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 GDAQ9Y2T3 454 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 EFCAB6Q5THR3 1501 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 SERPINB6P35237 376 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 GABPB1Q06547 395 aaPredicted RBP20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 CIAPIN1Q6FI81 312 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 DNAJC24Q6P3W2 148 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 METTL23Q86XA0 190 aa20.25■□□□□ 0.83
SMARCC1-201ENST00000254480 POTEMA6NI47 508 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 TDRD7Q8NHU6 1098 aaKnown RBP20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 CDC23Q9UJX2 597 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 SPDYE2BA6NHP3 402 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 PRPF3O43395 683 aaKnown RBP20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 SPDYE6P0CI01 402 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 BPIFB4P59827 614 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 RSPH3Q86UC2 560 aa20.24■□□□□ 0.83
SMARCC1-201ENST00000254480 MIS12Q9H081 205 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms