RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 USP25Q9UHP3 1055 aa3.53□□□□□ -1.84
VIM-210ENST00000637053 CEP131Q9UPN4 1083 aa3.53□□□□□ -1.84
VIM-210ENST00000637053 TEX51A0A1B0GUA7 166 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 IQCA1LA6NCM1 817 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 TMEM110-MUSTN1A8MSY1 372 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 DCDC2CA8MYV0 355 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 C9IYK1 514 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 PRPF3O43395 683 aaKnown RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 AKAP8O43823 692 aaKnown RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 TRIM37O94972 964 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 CTSHP09668 335 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 NEFHP12036 1026 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 TYRP1P17643 537 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 ETFBP38117 255 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 STT3AP46977 705 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 NEK2P51955 445 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 COPAP53621 1224 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 BPIFB3P59826 476 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 ATP2B2Q01814 1243 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 PLCB3Q01970 1234 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 ZNF252P-AS1Q0IIN9 211 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 ORC1Q13415 861 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 TMED1Q13445 227 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 BIRC3Q13489 604 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 PICALMQ13492 652 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 PUM1Q14671 1186 aaKnown RBP eCLIP3.52□□□□□ -1.853e-9■■■□□ 15.2
VIM-210ENST00000637053 KIF22Q14807 665 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 GFOD2Q3B7J2 385 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 FAM102BQ5T8I3 360 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 ZBTB37Q5TC79 503 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 NXNQ6DKJ4 435 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 MZT2BQ6NZ67 158 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 THAP5Q7Z6K1 395 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 PNMA8AQ86V59 439 aaPredicted RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 C12orf40Q86WS4 652 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 IRF2BP1Q8IU81 584 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 SYT8Q8NBV8 401 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 CHAC2Q8WUX2 184 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 HNRNPLLQ8WVV9 542 aaKnown RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 DACT3Q96B18 629 aaPredicted RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 SH3KBP1Q96B97 665 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 CDK5RAP3Q96JB5 506 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 SLX1AQ9BQ83 275 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 AP1M1Q9BXS5 423 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 RTFDC1Q9BY42 306 aaPredicted RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 ASPSCR1Q9BZE9 553 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 CDH19Q9H159 772 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 TMEM39AQ9NV64 488 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 SAGE1Q9NXZ1 904 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 UTP6Q9NYH9 597 aaKnown RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 TBK1Q9UHD2 729 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 MCM8Q9UJA3 840 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 NOB1Q9ULX3 412 aaKnown RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 SNX5Q9Y5X3 404 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 DGKBQ9Y6T7 804 aa3.52□□□□□ -1.85
VIM-210ENST00000637053 MORC2Q9Y6X9 1032 aaPredicted RBP3.52□□□□□ -1.85
VIM-210ENST00000637053 VGLL3A8MV65 326 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 MPHOSPH10O00566 681 aaKnown RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 NDUFB5O43674 189 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 SASH1O94885 1247 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 FAM13AO94988 1023 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 ARIH2O95376 493 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 AGR2O95994 175 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 PI3P19957 117 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 PAX7P23759 505 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 ARNTP27540 789 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 STAT3P40763 770 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 RENBPP51606 427 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 ROR1Q01973 937 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 SLC20A2Q08357 652 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 PIN1Q13526 163 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 PPP2R5BQ15173 497 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 SFRP5Q5T4F7 317 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 RSRC2Q7L4I2 434 aaKnown RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 HS2ST1Q7LGA3 356 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 THNSL2Q86YJ6 484 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 SULF2Q8IWU5 870 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 TEX9Q8N6V9 391 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 MAGEB6Q8N7X4 407 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 ARL10Q8N8L6 244 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 PJA1Q8NG27 643 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 WDR66Q8TBY9 1149 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 RASGRP4Q8TDF6 673 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.51□□□□□ -1.85
VIM-210ENST00000637053 GIMAP1Q8WWP7 306 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 TAF4BQ92750 862 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 N4BP2L2Q92802 583 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 SEC16BQ96JE7 1060 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 CCDC94Q9BW85 323 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 TRIM6Q9C030 488 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 OSBPL5Q9H0X9 879 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 ADAM7Q9H2U9 754 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 ZNF552Q9H707 407 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 CNNM2Q9H8M5 875 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 EPB41L4AQ9HCS5 686 aaPredicted RBP3.51□□□□□ -1.85
VIM-210ENST00000637053 PLCB1Q9NQ66 1216 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 SMYD2Q9NRG4 433 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 HOXC10Q9NYD6 342 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 SEL1LQ9UBV2 794 aa3.51□□□□□ -1.85
VIM-210ENST00000637053 GPN3Q9UHW5 284 aaPredicted RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms