RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CATSPER3Q86XQ3 398 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 MICALL2Q8IY33 904 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 SLFN12Q8IYM2 578 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 MB21D1Q8N884 522 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 CHURC1Q8WUH1 139 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 CNOT6LQ96LI5 555 aaKnown RBP16.15■□□□□ 0.18
VRK3-217ENST00000599538 TUBGCP2Q9BSJ2 902 aa16.15■□□□□ 0.18
VRK3-217ENST00000599538 IGLV3-22A0A075B6J6 115 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 CTIFO43310 598 aaKnown RBP16.14■□□□□ 0.17
VRK3-217ENST00000599538 PLA2G4BP0C869 781 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 SPATA31C1P0DKV0 1188 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 COASYQ13057 564 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 KIF18AQ8NI77 898 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 SGIP1Q9BQI5 828 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 WDR18Q9BV38 432 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 NT5C3AQ9H0P0 336 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 TBC1D7Q9P0N9 293 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 GJA3Q9Y6H8 435 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 ATAD5Q96QE3 1844 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 SRCAPQ6ZRS2 3230 aa16.14■□□□□ 0.17
VRK3-217ENST00000599538 BICDL2A1A5D9 508 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 PRKCSHP14314 528 aaPredicted RBP16.13■□□□□ 0.17
VRK3-217ENST00000599538 KLK7P49862 253 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 ARSHQ5FYA8 562 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 AGBL1Q96MI9 1066 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 VAV3Q9UKW4 847 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 KDM3AQ9Y4C1 1321 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 EML1O00423 815 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 CYP3A4P08684 503 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 CYP11B2P19099 503 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 ERCC3P19447 782 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 ERVK-24P63145 666 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 MIIPQ5JXC2 388 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 LDHDQ86WU2 507 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 FEZ1Q99689 392 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 MRPL44Q9H9J2 332 aaKnown RBP16.13■□□□□ 0.17
VRK3-217ENST00000599538 ABHD10Q9NUJ1 306 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 MAGEC2Q9UBF1 373 aaPredicted RBP16.13■□□□□ 0.17
VRK3-217ENST00000599538 FZD1Q9UP38 647 aa16.13■□□□□ 0.17
VRK3-217ENST00000599538 TTC26A0AVF1 554 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 RASSF10A6NK89 507 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 TBX3O15119 743 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 ZNF76P36508 570 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 SLC12A3P55017 1021 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 ETF1P62495 437 aaKnown RBP16.12■□□□□ 0.17
VRK3-217ENST00000599538 CYP4A11Q02928 519 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 PRAMEF18Q5VWM3 479 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 MCTP2Q6DN12 878 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 GPBP1Q86WP2 473 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 GUF1Q8N442 669 aaKnown RBP16.12■□□□□ 0.17
VRK3-217ENST00000599538 PANK4Q9NVE7 773 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 DNAI1Q9UI46 699 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 CNOT7Q9UIV1 285 aaKnown RBP16.12■□□□□ 0.17
VRK3-217ENST00000599538 HACL1Q9UJ83 578 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.12■□□□□ 0.17
VRK3-217ENST00000599538 ZNF536O15090 1300 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 GCOM1H8Y6P7 765 aaPredicted RBP16.12■□□□□ 0.17
VRK3-217ENST00000599538 POLR2MP0CAP2 368 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 PTGER2P43116 358 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 NBPF12Q5TAG4 269 aaPredicted RBP16.12■□□□□ 0.17
VRK3-217ENST00000599538 CNGA4Q8IV77 575 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 NOC3LQ8WTT2 800 aaKnown RBP16.12■□□□□ 0.17
VRK3-217ENST00000599538 BCAS3Q9H6U6 928 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 FEM1BQ9UK73 627 aa16.12■□□□□ 0.17
VRK3-217ENST00000599538 KIF2AO00139 706 aaPredicted RBP16.11■□□□□ 0.17
VRK3-217ENST00000599538 ZSCAN12O43309 604 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 PLA2G6O60733 806 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 FECHP22830 423 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 KRT9P35527 623 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 PABPC4Q13310 644 aaKnown RBP eCLIP16.11■□□□□ 0.17
VRK3-217ENST00000599538 FAM160B2Q86V87 743 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 NLGN2Q8NFZ4 835 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 FAM20AQ96MK3 541 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 IRX2Q9BZI1 471 aaPredicted RBP16.11■□□□□ 0.17
VRK3-217ENST00000599538 SH2D4AQ9H788 454 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 POLD4Q9HCU8 107 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 RGL1Q9NZL6 768 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 PCDHA2Q9Y5H9 948 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 ADGRG1Q9Y653 693 aa16.11■□□□□ 0.17
VRK3-217ENST00000599538 RPA1P27694 616 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 PPP1R2P41236 205 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 MTIF2P46199 727 aaKnown RBP16.1■□□□□ 0.17
VRK3-217ENST00000599538 FAM26FQ5R3K3 315 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 LRRN4CLQ8ND94 238 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 WDR24Q96S15 920 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 CHP1Q99653 195 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 LRRC27Q9C0I9 530 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 DEFB129Q9H1M3 183 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 ZNF215Q9UL58 517 aaPredicted RBP16.1■□□□□ 0.17
VRK3-217ENST00000599538 ZNF541Q9H0D2 1346 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 FZD9O00144 591 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 CCP110O43303 1012 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 HAUS3Q68CZ6 603 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 LRRC55Q6ZSA7 311 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 NOC4LQ9BVI4 516 aaKnown RBP16.1■□□□□ 0.17
VRK3-217ENST00000599538 COL20A1Q9P218 1284 aa16.1■□□□□ 0.17
VRK3-217ENST00000599538 MRPL11Q9Y3B7 192 aaKnown RBP16.1■□□□□ 0.17
VRK3-217ENST00000599538 A0A1W2PQC6 194 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 NFIBO00712 420 aa16.09■□□□□ 0.17
VRK3-217ENST00000599538 ABL1P00519 1130 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms