RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 CARSP49589 748 aaKnown RBP13.47□□□□□ -0.25
SHMT1-208ENST00000582352 ATP1A2P50993 1020 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 FXR2P51116 673 aaKnown RBP eCLIP13.47□□□□□ -0.25
SHMT1-208ENST00000582352 GSTO1P78417 241 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 KRT79Q5XKE5 535 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 USP17L2Q6R6M4 530 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 SNX29Q8TEQ0 813 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 RAD54LQ92698 747 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 DDX12PQ92771 950 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 NLRP3Q96P20 1036 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 PNMA5Q96PV4 448 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 GDF3Q9NR23 364 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 COL4A3BPQ9Y5P4 624 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 POTEMA6NI47 508 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 KIAA0754O94854 1291 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 PSMD2Q13200 908 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 DIXDC1Q155Q3 683 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 TXNRD3Q86VQ6 643 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 MYOCDQ8IZQ8 938 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 EYA3Q99504 573 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 CDCA7Q9BWT1 371 aaPredicted RBP13.47□□□□□ -0.25
SHMT1-208ENST00000582352 TMEM260Q9NX78 707 aa13.47□□□□□ -0.25
SHMT1-208ENST00000582352 GRID2IPA4D2P6 1211 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 ZEB2O60315 1214 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 CLSTN1O94985 981 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 FTCDO95954 541 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 LRRC41Q15345 812 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 MAPKAPK5Q8IW41 473 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 WDR66Q8TBY9 1149 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 MTMR9Q96QG7 549 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 PIGSQ96S52 555 aa13.46□□□□□ -0.25
SHMT1-208ENST00000582352 ATXN2Q99700 1313 aaKnown RBP13.46□□□□□ -0.26
SHMT1-208ENST00000582352 ESYT2A0FGR8 921 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 ZSCAN5CA6NGD5 496 aaPredicted RBP13.46□□□□□ -0.26
SHMT1-208ENST00000582352 GUCY2FP51841 1108 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 FKBP3Q00688 224 aaKnown RBP13.46□□□□□ -0.26
SHMT1-208ENST00000582352 SLC10A5Q5PT55 438 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 FAM83BQ5T0W9 1011 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 KDM7AQ6ZMT4 941 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 SUGP1Q8IWZ8 645 aaKnown RBP13.46□□□□□ -0.26
SHMT1-208ENST00000582352 SYN2Q92777 582 aaPredicted RBP13.46□□□□□ -0.26
SHMT1-208ENST00000582352 KRT12Q99456 494 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 LSM14BQ9BX40 385 aaKnown RBP13.46□□□□□ -0.26
SHMT1-208ENST00000582352 NYXQ9GZU5 481 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 SNED1Q8TER0 1413 aa13.46□□□□□ -0.26
SHMT1-208ENST00000582352 ZNF335Q9H4Z2 1342 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-208ENST00000582352 TRAF5O00463 557 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 SLC37A4O43826 429 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 FAM153BP0C7A2 387 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 POLR2FP61218 127 aaKnown RBP13.45□□□□□ -0.26
SHMT1-208ENST00000582352 KCNMA1Q12791 1236 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 NAB2Q15742 525 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 FAM153CQ494X1 144 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 TBC1D9BQ66K14 1250 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 FOXR2Q6PJQ5 311 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 SPATS2Q86XZ4 545 aaKnown RBP13.45□□□□□ -0.26
SHMT1-208ENST00000582352 MREGQ8N565 214 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 GLIS3Q8NEA6 775 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.45□□□□□ -0.26
SHMT1-208ENST00000582352 FAM153AQ9UHL3 310 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 ATP6V0A2Q9Y487 856 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 COL5A3P25940 1745 aaPredicted RBP13.45□□□□□ -0.26
SHMT1-208ENST00000582352 ZNF233A6NK53 670 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 TDP2O95551 362 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 NR1D1P20393 614 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 ADCY7P51828 1080 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 TNNC1P63316 161 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 RAPGEF1Q13905 1077 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 IQCKQ8N0W5 287 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 WHAMMQ8TF30 809 aa13.45□□□□□ -0.26
SHMT1-208ENST00000582352 hCG_1984214I3L0E3 225 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 ZPR1O75312 459 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 GUCY2CP25092 1073 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 EPS15P42566 896 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 SLC18A3Q16572 532 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 NBPF5PQ86XG9 351 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-208ENST00000582352 ZNF713Q8N859 430 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-208ENST00000582352 KAT2BQ92831 832 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 PCDHGC5Q9Y5F6 944 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 TLR2O60603 784 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 KLRC1P26715 233 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 SMARCA1P28370 1054 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 LSP1P33241 339 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 USP8P40818 1118 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 CDK8P49336 464 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 ARID5AQ03989 594 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 EHHADHQ08426 723 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 COASYQ13057 564 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 PDIA5Q14554 519 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 KIAA0753Q2KHM9 967 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 TBC1D5Q92609 795 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 TAF4BQ92750 862 aa13.44□□□□□ -0.26
SHMT1-208ENST00000582352 RNPC3Q96LT9 517 aaKnown RBP13.44□□□□□ -0.26
SHMT1-208ENST00000582352 GOLGA6L10A6NI86 522 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 TMEM119Q4V9L6 283 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 ZCWPW2Q504Y3 356 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 FAM26FQ5R3K3 315 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 MEI1Q5TIA1 1274 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 C16orf86Q6ZW13 317 aa13.43□□□□□ -0.26
SHMT1-208ENST00000582352 MICALCLQ6ZW33 695 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms