RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 EXOC3O60645 756 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 DLATP10515 647 aaKnown RBP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 TRIM21P19474 475 aaKnown RBP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 GABPAQ06546 454 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 PKN1Q16512 942 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 GNASQ5JWF2 1037 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 KIAA1755Q5JYT7 1200 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 TMED8Q6PL24 325 aaPredicted RBP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 CSGALNACT2Q8N6G5 542 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 SLC7A3Q8WY07 619 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 LARP4BQ92615 738 aaKnown RBP6.06□□□□□ -1.44
VPS13C-209ENST00000560637 CAPNS2Q96L46 248 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 TAB2Q9NYJ8 693 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 IFNKQ9P0W0 207 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 NFE2L3Q9Y4A8 694 aa6.06□□□□□ -1.44
VPS13C-209ENST00000560637 GOLGA8IPA6NC78 632 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM88BA6NKF7 163 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 GOLGA8JA6NMD2 632 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 BTBD19C9JJ37 291 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SMTNP53814 917 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ZNF280AP59817 542 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 RAPGEF1Q13905 1077 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 FKBP15Q5T1M5 1219 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 GALNT17Q6IS24 598 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 FAM117BQ6P1L5 589 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 LRSAM1Q6UWE0 723 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 KRBA2Q6ZNG9 492 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ZBTB33Q86T24 672 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SLFN12Q8IYM2 578 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 COPS5Q92905 334 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 NUDT12Q9BQG2 462 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 PHF20Q9BVI0 1012 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 MOV10L1Q9BXT6 1211 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 RBSNQ9H1K0 784 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 PORCNQ9H237 461 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 GOLPH3LQ9H4A5 285 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 RIC8AQ9NPQ8 531 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 A1CFQ9NQ94 594 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 NUP98P52948 1817 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ICAM1P05362 532 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ELNP15502 786 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 DNM2P50570 870 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 PEX3P56589 373 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 FKBP1AP62942 108 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 PPATQ06203 517 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM132BQ14DG7 1078 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 LY6KQ17RY6 165 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 STXBP4Q6ZWJ1 553 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 LRRC71Q8N4P6 559 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 KCTD17Q8N5Z5 321 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SPAG5Q96R06 1193 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 NAP1L4Q99733 375 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 CLSTN2Q9H4D0 955 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 PANK4Q9NVE7 773 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 POLR3EQ9NVU0 708 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ZNHIT6Q9NWK9 470 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 RMND1Q9NWS8 449 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 GDAQ9Y2T3 454 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 PRPF6O94906 941 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 KRT13P13646 458 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 CMA1P23946 247 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ADORA2AP29274 412 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 DSG3P32926 999 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 NCBP1Q09161 790 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SREBF2Q12772 1141 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 STRN3Q13033 797 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 DPCR1Q3MIW9 517 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ODF2Q5BJF6 829 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SPOUT1Q5T280 376 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 FKBP1CQ5VVH2 108 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 OTUD6AQ7L8S5 288 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 FAM43AQ8N2R8 423 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 FAM200AQ8TCP9 573 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 NLRP7Q8WX94 980 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 LENG1Q96BZ8 264 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 LXNQ9BS40 222 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SRRTQ9BXP5 876 aaKnown RBP6.05□□□□□ -1.44
VPS13C-209ENST00000560637 KCNH7Q9NS40 1196 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 RCOR1Q9UKL0 485 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 USP20Q9Y2K6 914 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SNCAIPQ9Y6H5 919 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 WDR19Q8NEZ3 1342 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 ARFGEF2Q9Y6D5 1785 aa6.05□□□□□ -1.44
VPS13C-209ENST00000560637 SPDYE16A6NNV3 312 aaPredicted RBP6.04□□□□□ -1.44
VPS13C-209ENST00000560637 HNRNPDLO14979 420 aaKnown RBP6.04□□□□□ -1.44
VPS13C-209ENST00000560637 PLA2G4BP0C869 781 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 SOX10P56693 466 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ERVK-9P63128 1117 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ERVK-24P63145 666 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 CUL4BQ13620 913 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 TTLL4Q14679 1199 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 FAM26FQ5R3K3 315 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 KSR1Q8IVT5 923 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 OR6J1Q8NGC5 347 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 IL31RAQ8NI17 732 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 SYTL5Q8TDW5 730 aaPredicted RBP6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ATP6V0A1Q93050 837 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM143Q96AN5 459 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 FNBP1Q96RU3 617 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 MAP7D2Q96T17 732 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms