RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 BMP8BP34820 402 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 AK2P54819 239 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 AKAP17AQ02040 695 aaKnown RBP15.73■□□□□ 0.11
SHMT2-219ENST00000555563 LAMC2Q13753 1193 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 CELF3Q5SZQ8 465 aaKnown RBP15.73■□□□□ 0.11
SHMT2-219ENST00000555563 TEX2Q8IWB9 1127 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 DHX37Q8IY37 1157 aaKnown RBP15.73■□□□□ 0.11
SHMT2-219ENST00000555563 PPTC7Q8NI37 304 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 LBHD1Q9BQE6 289 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-219ENST00000555563 ALDH8A1Q9H2A2 487 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-219ENST00000555563 TMEM260Q9NX78 707 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 TBX21Q9UL17 535 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 TPCN1Q9ULQ1 816 aa15.73■□□□□ 0.11
SHMT2-219ENST00000555563 TRIOBPQ9H2D6 2365 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 DOCK5Q9H7D0 1870 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 SPATA31C2B4DYI2 1134 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 CPLX1O14810 134 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 FIBPO43427 364 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 ITGB5P18084 799 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 ITGB8P26012 769 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 CLK2P49760 499 aaKnown RBP15.72■□□□□ 0.11
SHMT2-219ENST00000555563 MYSM1Q5VVJ2 828 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 PPP1R13LQ8WUF5 828 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 SPATA33Q96N06 139 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 ANO3Q9BYT9 981 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 UBE2OQ9C0C9 1292 aaKnown RBP15.72■□□□□ 0.11
SHMT2-219ENST00000555563 ZMYND12Q9H0C1 365 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 EHMT1Q9H9B1 1298 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 TMEM39AQ9NV64 488 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 MYH7BA7E2Y1 1941 aa15.72■□□□□ 0.11
SHMT2-219ENST00000555563 ADAMTS3O15072 1205 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 TLR3O15455 904 aaKnown RBP15.71■□□□□ 0.11
SHMT2-219ENST00000555563 CD4P01730 458 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 ZNF286BP0CG31 522 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 RAG1P15918 1043 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 SCRN1Q12765 414 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 AP3B2Q13367 1082 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 ANKRD1Q15327 319 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 DGKDQ16760 1214 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 HSDL1Q3SXM5 330 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 TRIM22Q8IYM9 498 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 CCDC12Q8WUD4 166 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-219ENST00000555563 BADQ92934 168 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 GLT8D2Q9H1C3 349 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 BCAS3Q9H6U6 928 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 VPS54Q9P1Q0 977 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 UBIAD1Q9Y5Z9 338 aa15.71■□□□□ 0.11
SHMT2-219ENST00000555563 B4GALT4O60513 344 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 HOXD8P13378 290 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-219ENST00000555563 SREBF1P36956 1147 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 SSRP1Q08945 709 aaKnown RBP15.7■□□□□ 0.1
SHMT2-219ENST00000555563 NBPF20Q3BBV1 942 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 FAM47CQ5HY64 1035 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 JAKMIP3Q5VZ66 844 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 CPLX2Q6PUV4 134 aaKnown RBP15.7■□□□□ 0.1
SHMT2-219ENST00000555563 NLRX1Q86UT6 975 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 SLC17A8Q8NDX2 589 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 CCDC148Q8NFR7 591 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 KAT2BQ92831 832 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 GPRASP2Q96D09 838 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 SEZ6LQ9BYH1 1024 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 TRPV6Q9H1D0 765 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 SLKQ9H2G2 1235 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-219ENST00000555563 C6orf50Q9HD87 102 aa15.7■□□□□ 0.1
SHMT2-219ENST00000555563 PFKFB2O60825 505 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 LARGE1O95461 756 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 F2P00734 622 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 FOSP01100 380 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-219ENST00000555563 NEK4P51957 841 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 CHMP4BP1P59074 171 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 MTMR1Q13613 665 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 NEDD9Q14511 834 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 CYFIP1Q7L576 1253 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 REXO1Q8N1G1 1221 aaKnown RBP15.69■□□□□ 0.1
SHMT2-219ENST00000555563 PPP1R12CQ9BZL4 782 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 MLXIPQ9HAP2 919 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 TRMT13Q9NUP7 481 aaKnown RBP15.69■□□□□ 0.1
SHMT2-219ENST00000555563 DNAH12Q6ZR08 3092 aa15.69■□□□□ 0.1
SHMT2-219ENST00000555563 CDKL5O76039 1030 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 DEXIO95424 95 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 KCNA2P16389 499 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 GNA11P29992 359 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 NFRKBQ6P4R8 1299 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 METTL7BQ6UX53 244 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 TDHQ8IZJ6 230 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 RASGRP4Q8TDF6 673 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 CDHR1Q96JP9 859 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 AIFM3Q96NN9 605 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 SENP7Q9BQF6 1050 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 JADE2Q9NQC1 790 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 PKD2L1Q9P0L9 805 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 STK36Q9NRP7 1315 aa15.68■□□□□ 0.1
SHMT2-219ENST00000555563 DLL1O00548 723 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 NOP56O00567 594 aaKnown RBP15.67■□□□□ 0.1
SHMT2-219ENST00000555563 DTNBO60941 627 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 ATP9AO75110 1047 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 PPFIA4O75335 1185 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 TIMP1P01033 207 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 PSEN2P49810 448 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 ARHGAP4P98171 946 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms