RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RAD54LQ92698 747 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 DDX12PQ92771 950 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 DEFB129Q9H1M3 183 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 KIF13BQ9NQT8 1826 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 PHF20L1A8MW92 1017 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 RBL2Q08999 1139 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 TCP11X2Q5H9J9 407 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 TC2NQ8N9U0 490 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 C7orf25Q9BPX7 421 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 COL2A1P02458 1487 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-212ENST00000554467 CHMP2AO43633 222 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 MED24O75448 989 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 TBX2Q13207 712 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-212ENST00000554467 PDIA5Q14554 519 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 MTF1Q14872 753 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 MUM1L1Q5H9M0 696 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 ANKRD40Q6AI12 368 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 DESI2Q9BSY9 194 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 ZHX3Q9H4I2 956 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 PKD2L1Q9P0L9 805 aa13.03□□□□□ -0.32
SHMT2-212ENST00000554467 FER1L6Q2WGJ9 1857 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 PSMA7O14818 248 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 ASNSP08243 561 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 PSMC6P62333 389 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 KCNB1Q14721 858 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 FKBP1CQ5VVH2 108 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 C10orf67Q8IYJ2 551 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 ZKSCAN4Q969J2 545 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-212ENST00000554467 LENG9Q96B70 501 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 UBXN6Q9BZV1 441 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 VPS33BQ9H267 617 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 KCNMB3Q9NPA1 279 aa13.02□□□□□ -0.32
SHMT2-212ENST00000554467 RNF225M0QZC1 329 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-212ENST00000554467 GCFC2P16383 781 aaKnown RBP13.02□□□□□ -0.33
SHMT2-212ENST00000554467 PTGER2P43116 358 aa13.02□□□□□ -0.33
SHMT2-212ENST00000554467 COPB1P53618 953 aaKnown RBP13.02□□□□□ -0.33
SHMT2-212ENST00000554467 ORC2Q13416 577 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-212ENST00000554467 CSGALNACT2Q8N6G5 542 aa13.02□□□□□ -0.33
SHMT2-212ENST00000554467 PPP1R13BQ96KQ4 1090 aa13.02□□□□□ -0.33
SHMT2-212ENST00000554467 SGIP1Q9BQI5 828 aa13.02□□□□□ -0.33
SHMT2-212ENST00000554467 FGFBP2Q9BYJ0 223 aa13.02□□□□□ -0.33
SHMT2-212ENST00000554467 CUEDC2Q9H467 287 aa13.02□□□□□ -0.33
SHMT2-212ENST00000554467 MYO1CO00159 1063 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 USP11P51784 963 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 AMPD3Q01432 767 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 STIM1Q13586 685 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 KIF4BQ2VIQ3 1234 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TRPM4Q8TD43 1214 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 CRYGNQ8WXF5 182 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 DUSP9Q99956 384 aaKnown RBP13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TANGO6Q9C0B7 1094 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 RASSF4Q9H2L5 321 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 L2HGDHQ9H9P8 463 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 DNAI1Q9UI46 699 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 LOC102724159A0A0B4J2E5 919 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 MSH4O15457 936 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TBC1D12O60347 775 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 CASP14P31944 242 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 AP3B2Q13367 1082 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 PWP2Q15269 919 aaKnown RBP13.01□□□□□ -0.33
SHMT2-212ENST00000554467 FILIP1LQ4L180 1135 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 ANGEL2Q5VTE6 544 aaKnown RBP13.01□□□□□ -0.33
SHMT2-212ENST00000554467 LDHDQ86WU2 507 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TMEM139Q8IV31 216 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 ETNPPLQ8TBG4 499 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 SREBF1P36956 1147 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 FXR1P51114 621 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-212ENST00000554467 ZNF280AP59817 542 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-212ENST00000554467 UBXN1Q04323 297 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 MTMR2Q13614 643 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TMEM119Q4V9L6 283 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TTI2Q6NXR4 508 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 TOGARAM2Q6ZUX3 1019 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 GPIHBP1Q8IV16 184 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 CHURC1Q8WUH1 139 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 BAG1Q99933 345 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-212ENST00000554467 BCAS3Q9H6U6 928 aa13.01□□□□□ -0.33
SHMT2-212ENST00000554467 SASH3O75995 380 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 ARHGAP27Q6ZUM4 889 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 PPFIBP1Q86W92 1011 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 CCDC47Q96A33 483 aaKnown RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 GLT8D2Q9H1C3 349 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 SEMA6BQ9H3T3 888 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 YY1AP1Q9H869 796 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 RGL1Q9NZL6 768 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 STK17AQ9UEE5 414 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 SOWAHDA6NJG2 315 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 NFIBO00712 420 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 SEC31AO94979 1220 aaKnown RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 PABPC4Q13310 644 aaKnown RBP eCLIP13□□□□□ -0.338e-7■■■■■ 32.8
SHMT2-212ENST00000554467 CATSPER3Q86XQ3 398 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 REXO1L1PQ8IX06 675 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 P2RX5Q93086 422 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 WDR18Q9BV38 432 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 RAVER2Q9HCJ3 691 aaKnown RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 GEMIN8Q9NWZ8 242 aaKnown RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 CCPG1Q9ULG6 757 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 B4DLN1 442 aa13□□□□□ -0.33
SHMT2-212ENST00000554467 GCOM1H8Y6P7 765 aaPredicted RBP13□□□□□ -0.33
SHMT2-212ENST00000554467 EML1O00423 815 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms