RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NAA15Q9BXJ9 866 aaKnown RBP18.8■□□□□ 0.6
USP28-208ENST00000540438 CAPN11Q9UMQ6 739 aa18.8■□□□□ 0.6
USP28-208ENST00000540438 SPATA31A6Q5VVP1 1343 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 CFBP00751 764 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 EIF4A3P38919 411 aaKnown RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 GFPT1Q06210 699 aaPredicted RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 COASYQ13057 564 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 LONRF2Q1L5Z9 754 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 NEK11Q8NG66 645 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 DHTKD1Q96HY7 919 aaPredicted RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 ARFGAP3Q9NP61 516 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 RIC8AQ9NPQ8 531 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 MYO6Q9UM54 1294 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 DLEC1Q9Y238 1755 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 OAS2P29728 719 aaKnown RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 MRPL12P52815 198 aaKnown RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 FAM193AP78312 1265 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 PROCA1Q8NCQ7 364 aaPredicted RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 CAGE1Q8TC20 777 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 AK8Q96MA6 479 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 ZNHIT6Q9NWK9 470 aaKnown RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 COL24A1Q17RW2 1714 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 DDX39AO00148 427 aaKnown RBP18.79■□□□□ 0.6
USP28-208ENST00000540438 ZRANB2O95218 330 aaKnown RBP eCLIP18.79■□□□□ 0.61e-6■■■■■ 42
USP28-208ENST00000540438 ACTN1P12814 892 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 TERF2Q15554 542 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 KIAA1755Q5JYT7 1200 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 CSRNP1Q96S65 589 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 ANO3Q9BYT9 981 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 GOLPH3Q9H4A6 298 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 ARHGAP20Q9P2F6 1191 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 CAPN6Q9Y6Q1 641 aa18.79■□□□□ 0.6
USP28-208ENST00000540438 ITIH6Q6UXX5 1313 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 LAD1O00515 517 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 AKR1B10O60218 316 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 IGKV6D-41A0A0C4DH26 115 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 FAM86B1E9PN63 330 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 CLIC2O15247 247 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 NDUFB10O96000 172 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 FAM86B2P0C5J1 330 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 C2orf54Q08AI8 447 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 EZH2Q15910 746 aaKnown RBP18.78■□□□□ 0.6
USP28-208ENST00000540438 CACNA2D4Q7Z3S7 1137 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 NLGN1Q8N2Q7 840 aa18.78■□□□□ 0.6
USP28-208ENST00000540438 PACSIN2Q9UNF0 486 aaPredicted RBP18.78■□□□□ 0.6
USP28-208ENST00000540438 CTAGE15A4D2H0 777 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 PDE2AO00408 941 aaPredicted RBP18.77■□□□□ 0.6
USP28-208ENST00000540438 CTAGE8P0CG41 777 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 VWA3BQ502W6 1294 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 CTAGE6Q86UF2 777 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 CTAGE4Q8IX94 777 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 GPR161Q8N6U8 529 aaKnown RBP18.77■□□□□ 0.6
USP28-208ENST00000540438 SALL4Q9UJQ4 1053 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 H3BQF6 201 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 PRPF6O94906 941 aaKnown RBP18.77■□□□□ 0.6
USP28-208ENST00000540438 PLA2G4BP0C869 781 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 RASSF7Q02833 373 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 RBM26Q5T8P6 1007 aaKnown RBP18.77■□□□□ 0.6
USP28-208ENST00000540438 UNC13DQ70J99 1090 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.77■□□□□ 0.6
USP28-208ENST00000540438 GLIS2Q9BZE0 524 aaPredicted RBP18.77■□□□□ 0.6
USP28-208ENST00000540438 PDE11AQ9HCR9 933 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 FBXO28Q9NVF7 368 aa18.77■□□□□ 0.6
USP28-208ENST00000540438 CDK5RAP2Q96SN8 1893 aa18.77■□□□□ 0.59
USP28-208ENST00000540438 MYH10P35580 1976 aa18.77■□□□□ 0.59
USP28-208ENST00000540438 BICDL2A1A5D9 508 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 IPO7O95373 1038 aaKnown RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 SNHG28P0DPA3 235 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 ZNF76P36508 570 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 CTTNQ14247 550 aaKnown RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 ABCB5Q2M3G0 1257 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 POLR2FP61218 127 aaKnown RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 SLC7A5Q01650 507 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 SMC1AQ14683 1233 aaKnown RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 SLC27A3Q5K4L6 730 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 FAM26FQ5R3K3 315 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 TCERG1LQ5VWI1 586 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 DNAJC19Q96DA6 116 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 MASTLQ96GX5 879 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 DNAJC7Q99615 494 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 SHTN1A0MZ66 631 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 MEIS2O14770 477 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 TNNT3P45378 269 aaPredicted RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 CENPPQ6IPU0 288 aa18.76■□□□□ 0.59
USP28-208ENST00000540438 RIN2Q8WYP3 895 aaPredicted RBP18.76■□□□□ 0.59
USP28-208ENST00000540438 PPIP5K2O43314 1243 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 ONECUT3O60422 494 aaPredicted RBP18.75■□□□□ 0.59
USP28-208ENST00000540438 MYOCDQ8IZQ8 938 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 CCDC51Q96ER9 411 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 TTYH3Q9C0H2 523 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 PPP1R1BQ9UD71 204 aaPredicted RBP18.75■□□□□ 0.59
USP28-208ENST00000540438 H0YIN7 160 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 ALDH1B1P30837 517 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 ARHGAP4P98171 946 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 DCAF17Q5H9S7 520 aaPredicted RBP18.75■□□□□ 0.59
USP28-208ENST00000540438 CT47A1Q5JQC4 288 aaPredicted RBP18.75■□□□□ 0.59
USP28-208ENST00000540438 DACT2Q5SW24 774 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 NFRKBQ6P4R8 1299 aa18.75■□□□□ 0.59
USP28-208ENST00000540438 CATSPER3Q86XQ3 398 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms