RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 PCDH18Q9HCL0 1135 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 CLDND1Q9NY35 253 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 ZNF652Q9Y2D9 606 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 NPFFR2Q9Y5X5 522 aa5.8□□□□□ -1.48
VPS13A-213ENST00000539950 HGSO14964 777 aaPredicted RBP5.79□□□□□ -1.48
VPS13A-213ENST00000539950 DDR2Q16832 855 aa5.79□□□□□ -1.48
VPS13A-213ENST00000539950 PRR31Q5SQ13 230 aa5.79□□□□□ -1.48
VPS13A-213ENST00000539950 STEAP3Q658P3 488 aa5.79□□□□□ -1.48
VPS13A-213ENST00000539950 IER2Q9BTL4 223 aa5.79□□□□□ -1.48
VPS13A-213ENST00000539950 CDIP1Q9H305 208 aa5.79□□□□□ -1.48
VPS13A-213ENST00000539950 JAG2Q9Y219 1238 aa5.79□□□□□ -1.48
VPS13A-213ENST00000539950 TCRBV5S2A0A599 114 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 DLX3O60479 287 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 MSCO60682 206 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 TADA3O75528 432 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 ADAM9Q13443 819 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 RGL3Q3MIN7 710 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 EMC4Q5J8M3 183 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 MCTP2Q6DN12 878 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 GGNQ86UU5 652 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 TTLL6Q8N841 843 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS13A-213ENST00000539950 GMLQ99445 158 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 YIPF4Q9BSR8 244 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 R3HCC1Q9Y3T6 440 aaKnown RBP5.78□□□□□ -1.48
VPS13A-213ENST00000539950 PCDHB4Q9Y5E5 795 aa5.78□□□□□ -1.48
VPS13A-213ENST00000539950 AGRPO00253 132 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 KLF4O43474 513 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 ADRB1P08588 477 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 NKX3-2P78367 333 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 MAP4K2Q12851 820 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 CHRNA2Q15822 529 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 SPATS1Q496A3 300 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 SLC43A3Q8NBI5 491 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 KCTD13Q8WZ19 329 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 TOE1Q96GM8 510 aaKnown RBP5.77□□□□□ -1.49
VPS13A-213ENST00000539950 DTLQ9NZJ0 730 aa5.77□□□□□ -1.49
VPS13A-213ENST00000539950 PPARGC1AQ9UBK2 798 aaKnown RBP5.77□□□□□ -1.49
VPS13A-213ENST00000539950 K7ESM1 405 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 DDX3XO00571 662 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS13A-213ENST00000539950 DGKIO75912 1065 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 RBM25P49756 843 aaKnown RBP5.76□□□□□ -1.49
VPS13A-213ENST00000539950 TEPPQ6URK8 271 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 HHIPL2Q6UWX4 724 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 USP53Q70EK8 1073 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 TXNDC5Q8NBS9 432 aaKnown RBP5.76□□□□□ -1.49
VPS13A-213ENST00000539950 ZSWIM3Q96MP5 696 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 RBM15Q96T37 977 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS13A-213ENST00000539950 EPB41L1Q9H4G0 881 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 NGRNQ9NPE2 291 aaKnown RBP5.76□□□□□ -1.49
VPS13A-213ENST00000539950 ARHGEF4Q9NR80 690 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 WASF3Q9UPY6 502 aa5.76□□□□□ -1.49
VPS13A-213ENST00000539950 LRG1P02750 347 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 ITGB3P05106 788 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 HSP90AA2PQ14568 343 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-213ENST00000539950 FAM26FQ5R3K3 315 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 DBX2Q6ZNG2 339 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 PHF20Q9BVI0 1012 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 JAM3Q9BX67 310 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 GPR27Q9NS67 375 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 MYOTQ9UBF9 498 aa5.75□□□□□ -1.49
VPS13A-213ENST00000539950 CNOT11Q9UKZ1 510 aaKnown RBP5.75□□□□□ -1.49
VPS13A-213ENST00000539950 MROH6A6NGR9 719 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 ZNF28P17035 718 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 KIAA2012Q0VF49 1180 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 PRAMEF18Q5VWM3 479 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 PIP4K2CQ8TBX8 421 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 SGSM3Q96HU1 749 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 AARSD1Q9BTE6 412 aaKnown RBP5.74□□□□□ -1.49
VPS13A-213ENST00000539950 IGSF5Q9NSI5 407 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 RBPJLQ9UBG7 517 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 INVSQ9Y283 1065 aa5.74□□□□□ -1.49
VPS13A-213ENST00000539950 PRODHO43272 600 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 MLLT6P55198 1093 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-213ENST00000539950 NTRK3Q16288 839 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 TBC1D10BQ4KMP7 808 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-213ENST00000539950 YOD1Q5VVQ6 348 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-213ENST00000539950 KCNT2Q6UVM3 1135 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 TMC5Q6UXY8 1006 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 RBM12BQ8IXT5 1001 aaKnown RBP5.73□□□□□ -1.49
VPS13A-213ENST00000539950 LGI4Q8N135 537 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 OSBP2Q969R2 916 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 SMOC1Q9H4F8 434 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 SLC6A20Q9NP91 592 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 ASH2LQ9UBL3 628 aa5.73□□□□□ -1.49
VPS13A-213ENST00000539950 BLACEA4D250 179 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 SLC27A2O14975 620 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 B4GALT3O60512 393 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 PLATP00750 562 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 FGFR1P11362 822 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 PABPC1P11940 636 aaKnown RBP5.72□□□□□ -1.49
VPS13A-213ENST00000539950 IL13P35225 146 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 MAGEA10P43363 369 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-213ENST00000539950 GRIN1Q05586 938 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 RAB33AQ14088 237 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 LBX2Q6XYB7 198 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 PHOSPHO1Q8TCT1 267 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 CLEC4DQ8WXI8 215 aa5.72□□□□□ -1.49
VPS13A-213ENST00000539950 ZCCHC14Q8WYQ9 949 aaKnown RBP5.72□□□□□ -1.49
VPS13A-213ENST00000539950 CLIC6Q96NY7 704 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms