RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 NT5C3AQ9H0P0 336 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 PANK4Q9NVE7 773 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 ARHGAP20Q9P2F6 1191 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 L1RE1Q9UN81 338 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 KDM3AQ9Y4C1 1321 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 NRXN2Q9P2S2 1712 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 SIPA1L1O43166 1804 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 FAM196BA6NMK8 535 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 HOXA7P31268 230 aaPredicted RBP14.59□□□□□ -0.07
LDLR-203ENST00000535915 HNRNPH3P31942 346 aaKnown RBP14.59□□□□□ -0.07
LDLR-203ENST00000535915 CYP2C19P33261 490 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 CRKP46108 304 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 CACNB3P54284 484 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 TCP10Q12799 353 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 GPS2Q13227 327 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 RRAGAQ7L523 313 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 IFIH1Q9BYX4 1025 aaKnown RBP14.59□□□□□ -0.07
LDLR-203ENST00000535915 USO1O60763 962 aaKnown RBP14.58□□□□□ -0.07
LDLR-203ENST00000535915 ALDH1B1P30837 517 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 SLC1A4P43007 532 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 CKAP4Q07065 602 aaKnown RBP14.58□□□□□ -0.07
LDLR-203ENST00000535915 SEPT2Q15019 361 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 QRICH1Q2TAL8 776 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 FAM26FQ5R3K3 315 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 CAGE1Q8TC20 777 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 NAP1L4Q99733 375 aaKnown RBP14.58□□□□□ -0.07
LDLR-203ENST00000535915 EHD4Q9H223 541 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 JADE2Q9NQC1 790 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 TBC1D7Q9P0N9 293 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 KIAA1024Q9UPX6 916 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 ATF5Q9Y2D1 282 aaPredicted RBP14.58□□□□□ -0.07
LDLR-203ENST00000535915 PCDHA1Q9Y5I3 950 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 BRWD3Q6RI45 1802 aa14.58□□□□□ -0.07
LDLR-203ENST00000535915 LRRC53A6NM62 1247 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 E9PMD0 336 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 TRAF5O00463 557 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 EEF2P13639 858 aaKnown RBP14.58□□□□□ -0.08
LDLR-203ENST00000535915 KIF11P52732 1056 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 GPIHBP1Q8IV16 184 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 PROM2Q8N271 834 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 PURBQ96QR8 312 aaKnown RBP14.58□□□□□ -0.08
LDLR-203ENST00000535915 DNAJC18Q9H819 358 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 DBNDD1Q9H9R9 158 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 PDE11AQ9HCR9 933 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.58□□□□□ -0.08
LDLR-203ENST00000535915 PCDHA13Q9Y5I0 950 aa14.58□□□□□ -0.08
LDLR-203ENST00000535915 COL11A2P13942 1736 aaPredicted RBP14.58□□□□□ -0.08
LDLR-203ENST00000535915 ANO9A1A5B4 782 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 H3BQF6 201 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 AKR1B10O60218 316 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 EIF3JO75822 258 aaKnown RBP14.57□□□□□ -0.08
LDLR-203ENST00000535915 EIF4A3P38919 411 aaKnown RBP14.57□□□□□ -0.08
LDLR-203ENST00000535915 FKBP3Q00688 224 aaKnown RBP14.57□□□□□ -0.08
LDLR-203ENST00000535915 CCDC40Q4G0X9 1142 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 WDR93Q6P2C0 686 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 CACNA2D4Q7Z3S7 1137 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 NEK11Q8NG66 645 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 ZBTB9Q96C00 473 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 GLT8D2Q9H1C3 349 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 KCNQ5Q9NR82 932 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 RBM5P52756 815 aaKnown RBP eCLIP14.57□□□□□ -0.08
LDLR-203ENST00000535915 USP14P54578 494 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 SHROOM1Q2M3G4 852 aaPredicted RBP14.57□□□□□ -0.08
LDLR-203ENST00000535915 CERKLQ49MI3 558 aaPredicted RBP14.57□□□□□ -0.08
LDLR-203ENST00000535915 HYIQ5T013 277 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 KIAA0825Q8IV33 1275 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 CCDC155Q8N6L0 562 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 SMCR8Q8TEV9 937 aaPredicted RBP14.57□□□□□ -0.08
LDLR-203ENST00000535915 RPGRIP1Q96KN7 1286 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 COL4A3BPQ9Y5P4 624 aa14.57□□□□□ -0.08
LDLR-203ENST00000535915 POTEB3A0JP26 581 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 POTECB2RU33 542 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 ZNF185O15231 689 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 CASP8Q14790 479 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 CDC37Q16543 378 aaPredicted RBP14.56□□□□□ -0.08
LDLR-203ENST00000535915 SLFN13Q68D06 897 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 POTEBQ6S5H4 581 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 CCDC65Q8IXS2 484 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 TRIM58Q8NG06 486 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 TRIM34Q9BYJ4 488 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 ANO3Q9BYT9 981 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 PCDHAC2Q9Y5I4 1007 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 PLA2G4BP0C869 781 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 GYS2P54840 703 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 CACNB1Q02641 598 aaPredicted RBP14.56□□□□□ -0.08
LDLR-203ENST00000535915 RAD51AP2Q09MP3 1159 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 ZCWPW2Q504Y3 356 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 FOXR2Q6PJQ5 311 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 GPBP1Q86WP2 473 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 NLGN1Q8N2Q7 840 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 ZDHHC15Q96MV8 337 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 FGFBP2Q9BYJ0 223 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 CALCOCO1Q9P1Z2 691 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 NPHP3-ACAD11A0A0J9YXS1 232 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 DDTLA6NHG4 134 aaPredicted RBP14.56□□□□□ -0.08
LDLR-203ENST00000535915 TACC1O75410 805 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 USP11P51784 963 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 NELFCDQ8IXH7 590 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 DCAF4Q8WV16 495 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 BAP1Q92560 729 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms