RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CDHR1Q96JP9 859 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 NOC4LQ9BVI4 516 aaKnown RBP23.68■■□□□ 1.38
VPS28-206ENST00000526734 PPP1R12CQ9BZL4 782 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 TRPV6Q9H1D0 765 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 FAM217BQ9NTX9 383 aaPredicted RBP23.68■■□□□ 1.38
VPS28-206ENST00000526734 V9GY48 417 aaPredicted RBP23.68■■□□□ 1.38
VPS28-206ENST00000526734 SPATA31C2B4DYI2 1134 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 CDC27P30260 824 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 EVCP57679 992 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 C9orf50Q5SZB4 431 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 PSRC1Q6PGN9 363 aaPredicted RBP23.67■■□□□ 1.38
VPS28-206ENST00000526734 RNPC3Q96LT9 517 aaKnown RBP23.67■■□□□ 1.38
VPS28-206ENST00000526734 SPATA33Q96N06 139 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 MLXIPQ9HAP2 919 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 ZSWIM6Q9HCJ5 1215 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 BARHL2Q9NY43 387 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 CYP46A1Q9Y6A2 500 aa23.67■■□□□ 1.38
VPS28-206ENST00000526734 F2P00734 622 aa23.66■■□□□ 1.38
VPS28-206ENST00000526734 FOSP01100 380 aaPredicted RBP23.66■■□□□ 1.38
VPS28-206ENST00000526734 GIMAP8Q8ND71 665 aaPredicted RBP23.66■■□□□ 1.38
VPS28-206ENST00000526734 GPRASP2Q96D09 838 aa23.66■■□□□ 1.38
VPS28-206ENST00000526734 SENP7Q9BQF6 1050 aa23.66■■□□□ 1.38
VPS28-206ENST00000526734 RIC8AQ9NPQ8 531 aa23.66■■□□□ 1.38
VPS28-206ENST00000526734 ADCY7P51828 1080 aa23.65■■□□□ 1.38
VPS28-206ENST00000526734 EPHB4P54760 987 aa23.65■■□□□ 1.38
VPS28-206ENST00000526734 METTL7BQ6UX53 244 aa23.65■■□□□ 1.38
VPS28-206ENST00000526734 CCDC12Q8WUD4 166 aaPredicted RBP23.65■■□□□ 1.38
VPS28-206ENST00000526734 KAT2BQ92831 832 aa23.65■■□□□ 1.38
VPS28-206ENST00000526734 TRMT13Q9NUP7 481 aaKnown RBP23.65■■□□□ 1.38
VPS28-206ENST00000526734 NOD1Q9Y239 953 aa23.65■■□□□ 1.38
VPS28-206ENST00000526734 STXBP3O00186 592 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 CSF2RAP15509 400 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 CYP2C18P33260 490 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 ADD1P35611 737 aaKnown RBP23.64■■□□□ 1.37
VPS28-206ENST00000526734 SMAD3P84022 425 aaKnown RBP23.64■■□□□ 1.37
VPS28-206ENST00000526734 AP3B2Q13367 1082 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 UBE2SQ16763 222 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 PFKFB3Q16875 520 aaPredicted RBP23.64■■□□□ 1.37
VPS28-206ENST00000526734 HSDL1Q3SXM5 330 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 MCTP2Q6DN12 878 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 FAM109BQ6ICB4 259 aaPredicted RBP23.64■■□□□ 1.37
VPS28-206ENST00000526734 CCDC155Q8N6L0 562 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 MTIF3Q9H2K0 278 aaKnown RBP23.64■■□□□ 1.37
VPS28-206ENST00000526734 IL23AQ9NPF7 189 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 PCDHA6Q9UN73 950 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 PCDHA8Q9Y5H6 950 aa23.64■■□□□ 1.37
VPS28-206ENST00000526734 HAS3O00219 553 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 PITPNM1O00562 1244 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 NOP56O00567 594 aaKnown RBP23.63■■□□□ 1.37
VPS28-206ENST00000526734 MAFGO15525 162 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 PFKMP08237 780 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 SCG2P13521 617 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 PSEN2P49810 448 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 SP2Q02086 613 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 BFSP2Q13515 415 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 RPUSD2Q8IZ73 545 aaKnown RBP23.63■■□□□ 1.37
VPS28-206ENST00000526734 RTEL1Q9NZ71 1219 aa23.63■■□□□ 1.37
VPS28-206ENST00000526734 ESYT2A0FGR8 921 aa23.62■■□□□ 1.37
VPS28-206ENST00000526734 PRPF3O43395 683 aaKnown RBP23.62■■□□□ 1.37
VPS28-206ENST00000526734 ANAPC15P60006 121 aa23.62■■□□□ 1.37
VPS28-206ENST00000526734 AKAP17AQ02040 695 aaKnown RBP23.62■■□□□ 1.37
VPS28-206ENST00000526734 SEMA3FQ13275 785 aa23.62■■□□□ 1.37
VPS28-206ENST00000526734 MFSD10Q14728 455 aa23.62■■□□□ 1.37
VPS28-206ENST00000526734 C7orf31Q8N865 590 aa23.62■■□□□ 1.37
VPS28-206ENST00000526734 ZFP91Q96JP5 570 aaPredicted RBP23.62■■□□□ 1.37
VPS28-206ENST00000526734 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.62■■□□□ 1.377e-7■■■■■ 29.2
VPS28-206ENST00000526734 RNF26Q9BY78 433 aaPredicted RBP23.62■■□□□ 1.37
VPS28-206ENST00000526734 SMCO2A6NFE2 343 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 CYP2C9P11712 490 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 IFNAR1P17181 557 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 PDIA3P30101 505 aaKnown RBP23.61■■□□□ 1.37
VPS28-206ENST00000526734 RFC2P35250 354 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 KIAA0753Q2KHM9 967 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 TMEM240Q5SV17 173 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 TYW1BQ6NUM6 668 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 RETREG2Q8NC44 543 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 CAGE1Q8TC20 777 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 WNT8AQ9H1J5 351 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 GTF2IRD1Q9UHL9 959 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 UBIAD1Q9Y5Z9 338 aa23.61■■□□□ 1.37
VPS28-206ENST00000526734 ZNF286BP0CG31 522 aa23.6■■□□□ 1.37
VPS28-206ENST00000526734 CHMP4BP1P59074 171 aa23.6■■□□□ 1.37
VPS28-206ENST00000526734 PTGISQ16647 500 aa23.6■■□□□ 1.37
VPS28-206ENST00000526734 ZNF274Q96GC6 653 aaPredicted RBP23.6■■□□□ 1.37
VPS28-206ENST00000526734 UMODL1Q5DID0 1318 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 ITGB5P18084 799 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 CCL23P55773 120 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 RBL2Q08999 1139 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 MTMR1Q13613 665 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 TOB2Q14106 344 aaPredicted RBP23.59■■□□□ 1.37
VPS28-206ENST00000526734 RASIP1Q5U651 963 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 C16orf59Q7L2K0 433 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 CYFIP1Q7L576 1253 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 DEFB123Q8N688 67 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 CCDC148Q8NFR7 591 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 C16orf70Q9BSU1 422 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 ANO3Q9BYT9 981 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 C6orf50Q9HD87 102 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 JADE2Q9NQC1 790 aa23.59■■□□□ 1.37
VPS28-206ENST00000526734 TMEM265A0A087WTH1 108 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms