RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 KRT23Q9C075 422 aa8.27□□□□□ -1.09
CLIP1-205ENST00000514271 ARMT1Q9H993 441 aa8.27□□□□□ -1.09
CLIP1-205ENST00000514271 CAPN11Q9UMQ6 739 aa8.27□□□□□ -1.09
CLIP1-205ENST00000514271 KCNH4Q9UQ05 1017 aa8.27□□□□□ -1.09
CLIP1-205ENST00000514271 TANC1Q9C0D5 1861 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 GSG1L2A8MUP6 293 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 AKR1B15C9JRZ8 316 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 RNF40O75150 1001 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 FDX1P10109 184 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 PAX3P23760 479 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 HNRNPH1P31943 449 aaKnown RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 MAP2K1Q02750 393 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 PREPLQ4J6C6 727 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 SH3D19Q5HYK7 790 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 TEX35Q5T0J7 233 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 ADGRA1Q86SQ6 560 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 SLC35F6Q8N357 371 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 SDR16C5Q8N3Y7 309 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 IGSF22Q8N9C0 903 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 PROCA1Q8NCQ7 364 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 KAT14Q9H8E8 782 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 SLC12A6Q9UHW9 1150 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 MYPNQ86TC9 1320 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 CCDC175P0C221 793 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 ME1P48163 572 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 DYNLL1P63167 89 aaKnown RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 TTLL12Q14166 644 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 KDM7AQ6ZMT4 941 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 USP49Q70CQ1 688 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 CTCFLQ8NI51 663 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 SLC10A4Q96EP9 437 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 PAGE5Q96GU1 130 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 WNK4Q96J92 1243 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 C12orf42Q96LP6 360 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 GSDMAQ96QA5 445 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 MCM9Q9NXL9 1143 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 RWDD2AQ9UIY3 292 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 ANGEL1Q9UNK9 670 aaKnown RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 USP17L5A8MUK1 530 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 ADAMTS3O15072 1205 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 CETPP11597 493 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 CAP2P40123 477 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 HUNKP57058 714 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 NBPF12Q5TAG4 269 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 WWC2Q6AWC2 1192 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 RASAL3Q86YV0 1011 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 JMYQ8N9B5 988 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 RPGRIP1Q96KN7 1286 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 DESI2Q9BSY9 194 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 FAM204AQ9H8W3 233 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 DDX4Q9NQI0 724 aaKnown RBP8.26□□□□□ -1.09
CLIP1-205ENST00000514271 NFE2L3Q9Y4A8 694 aa8.26□□□□□ -1.09
CLIP1-205ENST00000514271 BIN1O00499 593 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PRC1O43663 620 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 KIF4AO95239 1232 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 SNAPC2Q13487 334 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 ARHGEF6Q15052 776 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 SPRED3Q2MJR0 410 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 CST9Q5W186 159 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 MAPKAPK5Q8IW41 473 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 DRC7Q8IY82 874 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 MIGA1Q8NAN2 632 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 TMEM39BQ9GZU3 492 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 ARHGEF10LQ9HCE6 1279 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 ABT1Q9ULW3 272 aaKnown RBP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 ARIH1Q9Y4X5 557 aaPredicted RBP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PTPRFP10586 1907 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PHF20L1A8MW92 1017 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 NKRFO15226 690 aaKnown RBP eCLIP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 URI1O94763 535 aaPredicted RBP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 POTEIP0CG38 1075 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 POTEJP0CG39 1038 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 TOP1P11387 765 aaKnown RBP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 ERCC3P19447 782 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 COPB2P35606 906 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 CCNG1P51959 295 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 CCT2P78371 535 aaKnown RBP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PPARAQ07869 468 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 NFIAQ12857 509 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PICALMQ13492 652 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PTPN21Q16825 1174 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 TSEN2Q8NCE0 465 aaKnown RBP8.25□□□□□ -1.09
CLIP1-205ENST00000514271 LPAR1Q92633 364 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 TMEM87BQ96K49 555 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 PNMA3Q9UL41 463 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 WDR81Q562E7 1941 aa8.25□□□□□ -1.09
CLIP1-205ENST00000514271 TM4SF4P48230 202 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 ATP2C1P98194 919 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-205ENST00000514271 SPRYD7Q5W111 196 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 USP17L2Q6R6M4 530 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 DNAJC14Q6Y2X3 702 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-205ENST00000514271 ANKRD23Q86SG2 305 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 KRI1Q8N9T8 703 aaKnown RBP8.24□□□□□ -1.09
CLIP1-205ENST00000514271 C8orf76Q96K31 380 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 KANSL2Q9H9L4 492 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 NYAP2Q9P242 653 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 BTNL10A8MVZ5 291 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 CES2O00748 559 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 EDIL3O43854 480 aa8.24□□□□□ -1.09
CLIP1-205ENST00000514271 OAS1P00973 400 aaKnown RBP8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms