RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 WDR93Q6P2C0 686 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 CPLX2Q6PUV4 134 aaKnown RBP3.11□□□□□ -1.91
NEDD4-204ENST00000503468 SRGAP1Q7Z6B7 1085 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 SKAP1Q86WV1 359 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 TMTC2Q8N394 836 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 MSANTD4Q8NCY6 345 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.11□□□□□ -1.91
NEDD4-204ENST00000503468 RASGRP4Q8TDF6 673 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 SMARCE1Q969G3 411 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 CCDC102AQ96A19 550 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 FAM129AQ9BZQ8 928 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.11□□□□□ -1.91
NEDD4-204ENST00000503468 CHPF2Q9P2E5 772 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 FAN1Q9Y2M0 1017 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 CKAP5Q14008 2032 aa3.11□□□□□ -1.91
NEDD4-204ENST00000503468 FSBPO95073 299 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CRKLP46109 303 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ZBTB6Q15916 424 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ZNF827Q17R98 1081 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ZNF449Q6P9G9 518 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 TMTC3Q6ZXV5 915 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 LRRC34Q8IZ02 419 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 SPIRE2Q8WWL2 714 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 PKMYT1Q99640 499 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 MXD3Q9BW11 206 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 TMEM189-UBE2V1I3L0A0 370 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 EXOC5O00471 708 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 NDUFAB1O14561 156 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 TBC1D8O95759 1140 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ITGBL1O95965 494 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 AMPHP49418 695 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 PSMD7P51665 324 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 RRS1Q15050 365 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 PUM3Q15397 648 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ZRSR2Q15696 482 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CFAP100Q494V2 611 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CCDC40Q4G0X9 1142 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ADALQ6DHV7 355 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 PPP1R14BQ96C90 147 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 SPATA32Q96LK8 384 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 VCX3BQ9H321 246 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 VCX3AQ9NNX9 186 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CHCHD3Q9NX63 227 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 LIMD1Q9UGP4 676 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 LIMA1Q9UHB6 759 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 DDX20Q9UHI6 824 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ASAP1Q9ULH1 1129 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 TTF2Q9UNY4 1162 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 RABGAP1Q9Y3P9 1069 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CYP46A1Q9Y6A2 500 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ZFHX2Q9C0A1 2572 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 AFF2P51816 1311 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CCDC175P0C221 793 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 PDE6AP16499 860 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 GCKP35557 465 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 GNG11P61952 73 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 MTA1Q13330 715 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 BIRC2Q13490 618 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 HDGFL1Q5TGJ6 251 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 LARP1BQ659C4 914 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 REM2Q8IYK8 340 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 AK8Q96MA6 479 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 TRERF1Q96PN7 1200 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CCDC134Q9H6E4 229 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ATP6V0A4Q9HBG4 840 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 AVENQ9NQS1 362 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CWC25Q9NXE8 425 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 STOML2Q9UJZ1 356 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 UBIAD1Q9Y5Z9 338 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 HMGB1P1B2RPK0 211 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CAND2O75155 1236 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 MYBL2P10244 700 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 RPS6KB1P23443 525 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 HOXC13P31276 330 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ZNF132P52740 706 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CHMP4BP1P59074 171 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 FAM189BP81408 668 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 OS9Q13438 667 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 SUZ12Q15022 739 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 TTF1Q15361 905 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 IMMTQ16891 758 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 EMBQ6PCB8 327 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 FAM133AQ8N9E0 248 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 ANKRD2Q9GZV1 360 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 DHX36Q9H2U1 1008 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CBX8Q9HC52 389 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 DNMT3BQ9UBC3 853 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 RNF14Q9UBS8 474 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 FAM169AQ9Y6X4 670 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 LIN7AO14910 233 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 P4HA2O15460 535 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 MEFVO15553 781 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 AHCYL1O43865 530 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 RANBP6O60518 1105 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 PPFIA2O75334 1257 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 IL4RP24394 825 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 IRS1P35568 1242 aa3.1□□□□□ -1.91
NEDD4-204ENST00000503468 CLNS1AP54105 237 aaKnown RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 KIF23Q02241 960 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-204ENST00000503468 SFSWAPQ12872 951 aaKnown RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms