RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ANO9A1A5B4 782 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 WNT9AO14904 365 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 CTNND1O60716 968 aaKnown RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 LEFTY1O75610 366 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 VSIG8P0DPA2 414 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ELNP15502 786 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 HSPA6P17066 643 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 VCAM1P19320 739 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 BMP8BP34820 402 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ADCY1Q08828 1119 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 TERF2Q15554 542 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ZNF174Q15697 407 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 OSTM1Q86WC4 334 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 RASSF3Q86WH2 238 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 CPNE8Q86YQ8 564 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 TMEM130Q8N3G9 435 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 PANK1Q8TE04 598 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 TGFBRAP1Q8WUH2 860 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 TCTN2Q96GX1 697 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 STRBPQ96SI9 672 aaKnown RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 MAF1Q9H063 256 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 MS4A5Q9H3V2 200 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 NMRK2Q9NPI5 230 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 TOMM22Q9NS69 142 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ERBB4Q15303 1308 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 KCNK3O14649 394 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 PMM2O15305 246 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 MYO1BO43795 1136 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 MYBP10242 640 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 KRT85P78386 507 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 GPR158Q5T848 1215 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 MBLAC2Q68D91 279 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 RCSD1Q6JBY9 416 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 DAGLBQ8NCG7 672 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 SLC35G2Q8TBE7 412 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 ENOX1Q8TC92 643 aaKnown RBP5.88□□□□□ -1.47
VPS13A-212ENST00000493341 BOCQ9BWV1 1114 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 CEP41Q9BYV8 373 aa5.88□□□□□ -1.47
VPS13A-212ENST00000493341 PRR33A8MZF0 331 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 MYL3P08590 195 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 KIR3DL1P43629 444 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 GPR3P46089 330 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 IRF9Q00978 393 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 TNK2Q07912 1038 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 RAPGEF1Q13905 1077 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 GALEQ14376 348 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 ZNF267Q14586 743 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 GRIK4Q16099 956 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 INO80DQ53TQ3 878 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 SKAP1Q86WV1 359 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 ENAHQ8N8S7 591 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 PNISRQ8TF01 805 aaKnown RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 LMBR1Q8WVP7 490 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 PPM1EQ8WY54 764 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 TEKT5Q96M29 485 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 ELF4Q99607 663 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 JAM3Q9BX67 310 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 AKTIPQ9H8T0 292 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 BTG4Q9NY30 223 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 USP21Q9UK80 565 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 SPO11Q9Y5K1 396 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 SLC12A8A0AV02 714 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 LCHNA4D1U4 455 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 TRIM75PA6NK02 468 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 ZRANB2O95218 330 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 CELA2BP08218 269 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 HOXB4P17483 251 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 LSP1P33241 339 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 HTR3AP46098 478 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 TRAPPC10P48553 1259 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 JAM2P57087 298 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 LAPTM5Q13571 262 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 RRP12Q5JTH9 1297 aaKnown RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 LYPD4Q6UWN0 246 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 OTOP1Q7RTM1 612 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 KIAA1958Q8N8K9 716 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 NEDD1Q8NHV4 660 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 EZH1Q92800 747 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-212ENST00000493341 TNIP3Q96KP6 325 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 MMP19Q99542 508 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 PCIF1Q9H4Z3 704 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 C1GALT1Q9NS00 363 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 AP5S1Q9NUS5 200 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 FBXL7Q9UJT9 491 aa5.87□□□□□ -1.47
VPS13A-212ENST00000493341 TRBV23OR9-2A0A075B6M9 112 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 FAM95CA0A1B0GW59 222 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 FAM87AP0C7U9 286 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 BMP3P12645 472 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 TPP2P29144 1249 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-212ENST00000493341 SERPINB3P29508 390 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 BCL6P41182 706 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 SMAD3P84022 425 aaKnown RBP5.86□□□□□ -1.47
VPS13A-212ENST00000493341 LSAMPQ13449 338 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 PDCD1Q15116 288 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 NFKBIBQ15653 356 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 SMAD2Q15796 467 aaKnown RBP5.86□□□□□ -1.47
VPS13A-212ENST00000493341 FAM83BQ5T0W9 1011 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 SEZ6L2Q6UXD5 910 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 TTLL7Q6ZT98 887 aa5.86□□□□□ -1.47
VPS13A-212ENST00000493341 NAP1L4Q99733 375 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms