RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 IQSEC1Q6DN90 963 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 PPP1R18Q6NYC8 613 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 KCNV1Q6PIU1 500 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 TLK2Q86UE8 772 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 NLRX1Q86UT6 975 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 SRBD1Q8N5C6 995 aaKnown RBP9.21□□□□□ -0.94
USP40-216ENST00000485943 FAM133AQ8N9E0 248 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 FAM184AQ8NB25 1140 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 OR6J1Q8NGC5 347 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 ZNF274Q96GC6 653 aaPredicted RBP9.21□□□□□ -0.94
USP40-216ENST00000485943 GLT1D1Q96MS3 346 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 WDR11Q9BZH6 1224 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 RABGEF1Q9UJ41 708 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 SMCHD1A6NHR9 2005 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 DNAJC25-GNG10A0A024R161 153 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 SOWAHBA6NEL2 793 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 SMCO2A6NFE2 343 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 DNM1LO00429 736 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 NKRFO15226 690 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP40-216ENST00000485943 DYNC1LI2O43237 492 aaPredicted RBP9.2□□□□□ -0.94
USP40-216ENST00000485943 DUSP11O75319 330 aaKnown RBP9.2□□□□□ -0.94
USP40-216ENST00000485943 PGK1P00558 417 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 NR3C2P08235 984 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 SCG2P13521 617 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 ADD1P35611 737 aaKnown RBP9.2□□□□□ -0.94
USP40-216ENST00000485943 ADCYAP1R1P41586 468 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 MAP3K21Q5TCX8 1036 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 MAMDC4Q6UXC1 1216 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 SYTL5Q8TDW5 730 aaPredicted RBP9.2□□□□□ -0.94
USP40-216ENST00000485943 CLEC4DQ8WXI8 215 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 KCNB2Q92953 911 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 FERMT2Q96AC1 680 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 TAAR1Q96RJ0 339 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 RNF26Q9BY78 433 aaPredicted RBP9.2□□□□□ -0.94
USP40-216ENST00000485943 MLXIPQ9HAP2 919 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 STARD7Q9NQZ5 370 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 PXMP2Q9NR77 195 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 BRPF3Q9ULD4 1205 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 NOD1Q9Y239 953 aa9.2□□□□□ -0.94
USP40-216ENST00000485943 SPTLC1O15269 473 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 TLR3O15455 904 aaKnown RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 CYTH3O43739 400 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 EIF3JO75822 258 aaKnown RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 STAM2O75886 525 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 DEXIO95424 95 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 SNAI1O95863 264 aaPredicted RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 FOSP01100 380 aaPredicted RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 HSP90AA1P07900 732 aaKnown RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 MYL3P08590 195 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 PDIA3P30101 505 aaKnown RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 AK2P54819 239 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 RABEP1Q15276 862 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 SAFBQ15424 915 aaKnown RBP eCLIP9.19□□□□□ -0.94
USP40-216ENST00000485943 TUSC1Q2TAM9 212 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 FAM47CQ5HY64 1035 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 DHX37Q8IY37 1157 aaKnown RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 C7orf61Q8IZ16 206 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 PHKBQ93100 1093 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 MARVELD3Q96A59 401 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 CDHR1Q96JP9 859 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 ZSCAN31Q96LW9 406 aaPredicted RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 LBHD1Q9BQE6 289 aaPredicted RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 NCOA5Q9HCD5 579 aaKnown RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 PRDM5Q9NQX1 630 aaPredicted RBP9.19□□□□□ -0.94
USP40-216ENST00000485943 OGDHLQ9ULD0 1010 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 ATP11BQ9Y2G3 1177 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 CNTNAP5Q8WYK1 1306 aa9.19□□□□□ -0.94
USP40-216ENST00000485943 MOXD2PA6NHM9 499 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 PRPF3O43395 683 aaKnown RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 PPFIA3O75145 1194 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 GH1P01241 217 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 CDC27P30260 824 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 PBX2P40425 430 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 HSD17B4P51659 736 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 EMP3P54852 163 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 AP3B2Q13367 1082 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 LRRC41Q15345 812 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 FSCN1Q16658 493 aaKnown RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 UBE2SQ16763 222 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 PFKFB3Q16875 520 aaPredicted RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 MROH7Q68CQ1 1323 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 WWC2Q6AWC2 1192 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 USP17L6PQ6QN14 398 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 REXO1Q8N1G1 1221 aaKnown RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 GIMAP8Q8ND71 665 aaPredicted RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 MTMR8Q96EF0 704 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 PURBQ96QR8 312 aaKnown RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 BARHL2Q9NY43 387 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 SEPT9Q9UHD8 586 aaPredicted RBP9.18□□□□□ -0.94
USP40-216ENST00000485943 LIMCH1Q9UPQ0 1083 aa9.18□□□□□ -0.94
USP40-216ENST00000485943 FRMPD3Q5JV73 1810 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 SYNRGQ9UMZ2 1314 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 CCDC194A0A1B0GVG4 234 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 DCDC2CA8MYV0 355 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 SORBS3O60504 671 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 CABYRO75952 493 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 ZNF865P0CJ78 1059 aaPredicted RBP9.17□□□□□ -0.94
USP40-216ENST00000485943 IFNAR1P17181 557 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 MCM2P49736 904 aa9.17□□□□□ -0.94
USP40-216ENST00000485943 SP4Q02446 784 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms