RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ATP6V0A4Q9HBG4 840 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 L3MBTL1Q9Y468 752 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 ADAMTS7Q9UKP4 1686 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 PJA2O43164 708 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 LCA5LO95447 670 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 GCKP35557 465 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 PFKFB3Q16875 520 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 TBC1D1Q86TI0 1168 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 PROSER2Q86WR7 435 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 DNAJC10Q8IXB1 793 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 NEUROG2Q9H2A3 272 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 ADAMTS1Q9UHI8 967 aa20.64■□□□□ 0.89
CCDC88B-207ENST00000479965 ATP6V1G2O95670 118 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 BYSLQ13895 437 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 PDXDC1Q6P996 788 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 NSMCE1Q8WV22 266 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 BAP1Q92560 729 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 SMIM23A6NLE4 172 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 CTNND1O60716 968 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 CALML3P27482 149 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 ELF3P78545 371 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 TRIM28Q13263 835 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 MAN2A1Q16706 1144 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 INPP4AQ96PE3 977 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 ISCUQ9H1K1 167 aa20.63■□□□□ 0.89
CCDC88B-207ENST00000479965 LMTK3Q96Q04 1460 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 RAPGEF1Q13905 1077 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 TATDN2Q93075 761 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 LUC7LQ9NQ29 371 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 POLR2FP61218 127 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 XRCC4Q13426 336 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 LRRC41Q15345 812 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 FAM133BQ5BKY9 247 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 CNNM4Q6P4Q7 775 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 STAG2Q8N3U4 1231 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 SELENOSQ9BQE4 189 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 DPH5Q9H2P9 285 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 USP17L12C9JPN9 530 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 USP17L21D6R901 530 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 DAPK3O43293 454 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 RPS6KA1Q15418 735 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 SFMBT2Q5VUG0 894 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 CCT6BQ92526 530 aa20.62■□□□□ 0.89
CCDC88B-207ENST00000479965 DDAH1O94760 285 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 MYL1P05976 194 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 TECP42680 631 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 CCNHP51946 323 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 BIRC3Q13489 604 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 LETM2Q2VYF4 491 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 LRIG3Q6UXM1 1119 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 HEATR3Q7Z4Q2 680 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 CCDC63Q8NA47 563 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 ZCRB1Q8TBF4 217 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 SPDL1Q96EA4 605 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 LRRC4CQ9HCJ2 640 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 KIF1AQ12756 1690 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 TLDC2A0PJX2 215 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 FAM170AA1A519 330 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 H0YGN5 161 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 FGFR2P21802 821 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 MEI1Q5TIA1 1274 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 HGSNATQ68CP4 663 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 GIGYF2Q6Y7W6 1299 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 CUL5Q93034 780 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 AMACRQ9UHK6 382 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 NFS1Q9Y697 457 aa20.61■□□□□ 0.89
CCDC88B-207ENST00000479965 TRIM37O94972 964 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 CCSER1Q9C0I3 900 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 GGT7Q9UJ14 662 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 PCDHA4Q9UN74 947 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 GRID2IPA4D2P6 1211 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 SART1O43290 800 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 MGRN1O60291 552 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 NAB2Q15742 525 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 ASTE1Q2TB18 679 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 TLDC1Q6P9B6 456 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 CCDC197Q8NCU1 140 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 IQCDQ96DY2 449 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 GOPCQ9HD26 462 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 A0A087X0T9 212 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 FAM228BP0C875 321 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 DHX9Q08211 1270 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 C1orf131Q8NDD1 294 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 KCNG1Q9UIX4 513 aa20.6■□□□□ 0.89
CCDC88B-207ENST00000479965 PHRF1Q9P1Y6 1649 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 TSPY2A6NKD2 308 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 PDE8AO60658 829 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 ECHS1P30084 290 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 CHMP6Q96FZ7 201 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 PNMA2Q9UL42 364 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 ATP8A1Q9Y2Q0 1164 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 MROH5Q6ZUA9 1318 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 SRRM3A6NNA2 597 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 CCNT1O60563 726 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 ANKS4BQ8N8V4 417 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 FAM133AQ8N9E0 248 aa20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 LSM14BQ9BX40 385 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-207ENST00000479965 SSU72P8A0A1W2PR75 194 aa20.58■□□□□ 0.89
CCDC88B-207ENST00000479965 AMPD3Q01432 767 aa20.58■□□□□ 0.89
CCDC88B-207ENST00000479965 FAM83BQ5T0W9 1011 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms