RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SLC10A5Q5PT55 438 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 UNC13DQ70J99 1090 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 ADGRF4Q8IZF3 695 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 AFAP1L1Q8TED9 768 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 ATRIPQ8WXE1 791 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 HYOU1Q9Y4L1 999 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 GOLGA6L10A0A0M3HER8 536 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 ECE2O60344 883 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 CC2D1AQ6P1N0 951 aaPredicted RBP12.81□□□□□ -0.36
NPHP4-204ENST00000460696 SAMD7Q7Z3H4 446 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 ANO3Q9BYT9 981 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 TDRD3Q9H7E2 651 aaKnown RBP12.81□□□□□ -0.36
NPHP4-204ENST00000460696 RIC8AQ9NPQ8 531 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 AGPAT5Q9NUQ2 364 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 LIMA1Q9UHB6 759 aaKnown RBP12.81□□□□□ -0.36
NPHP4-204ENST00000460696 TFR2Q9UP52 801 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 MRFAP1Q9Y605 127 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 CHD2O14647 1828 aaKnown RBP12.81□□□□□ -0.36
NPHP4-204ENST00000460696 GSTTP1A0A1W2PQM5 241 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 POTEB3A0JP26 581 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 SFI1A8K8P3 1242 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 POTECB2RU33 542 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 ZBTB5O15062 677 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GNA14O95837 355 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GCFC2P16383 781 aaKnown RBP12.8□□□□□ -0.36
NPHP4-204ENST00000460696 KIF11P52732 1056 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 POTEBQ6S5H4 581 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 AMIGO3Q86WK7 504 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 C10orf67Q8IYJ2 551 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 U2AF1L4Q8WU68 220 aaKnown RBP12.8□□□□□ -0.36
NPHP4-204ENST00000460696 SPZ1Q9BXG8 430 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 MTMR4Q9NYA4 1195 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 MAD2L2Q9UI95 211 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 TLDC2A0PJX2 215 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GOLGA6CA6NDK9 693 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 KCNK3O14649 394 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 FLOT1O75955 427 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GH2P01242 217 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GOLGA6DP0CG33 693 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 BMP3P12645 472 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 CRKP46108 304 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 C2orf54Q08AI8 447 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 RPGRIP1Q96KN7 1286 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 NUCKS1Q9H1E3 243 aaKnown RBP12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GOLGA6AQ9NYA3 693 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 MRC1P22897 1456 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 SMIM23A6NLE4 172 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 EEF2P13639 858 aaKnown RBP12.8□□□□□ -0.36
NPHP4-204ENST00000460696 TCP1P17987 556 aaKnown RBP12.8□□□□□ -0.36
NPHP4-204ENST00000460696 GUCY2FP51841 1108 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 FAM178BQ8IXR5 827 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 FAM133AQ8N9E0 248 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 IQCDQ96DY2 449 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 BHMT2Q9H2M3 363 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 ADAMTS1Q9UHI8 967 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 RABGAP1Q9Y3P9 1069 aa12.8□□□□□ -0.36
NPHP4-204ENST00000460696 AFDNP55196 1824 aaKnown RBP12.8□□□□□ -0.36
NPHP4-204ENST00000460696 hCG_1984214I3L0E3 225 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 PRPF6O94906 941 aaKnown RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 POTEJP0CG39 1038 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 TERF2Q15554 542 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 EXOC3L4Q17RC7 722 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 PEX26Q7Z412 305 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 ZNF713Q8N859 430 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 LRRN4CLQ8ND94 238 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 DYDC1Q8WWB3 177 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 SH2D4AQ9H788 454 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 IL17RBQ9NRM6 502 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 BACH1O14867 736 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 IVLP07476 585 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 STAT3P40763 770 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 QRICH1Q2TAL8 776 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 TMC4Q7Z404 712 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 CCDC170Q8IYT3 715 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 CHURC1Q8WUH1 139 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 FTCDO95954 541 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 ALAS1P13196 640 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 HPDP32754 393 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 GJC1P36383 396 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 MAP3K9P80192 1104 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 ZSCAN26Q16670 478 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 TMED8Q6PL24 325 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 PCDHA13Q9Y5I0 950 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 PLEKHG2Q9H7P9 1386 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 GCOM1H8Y6P7 765 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 FOSP01100 380 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 POLR2MP0CAP2 368 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 PDHBP11177 359 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 STAT1P42224 750 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 NT5C2P49902 561 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 KCNB1Q14721 858 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 LRCH2Q5VUJ6 765 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 IFT20Q8IY31 132 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 TCHPQ9BT92 498 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 PICK1Q9NRD5 415 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 FAN1Q9Y2M0 1017 aa12.79□□□□□ -0.36
NPHP4-204ENST00000460696 MORC2Q9Y6X9 1032 aaPredicted RBP12.79□□□□□ -0.36
NPHP4-204ENST00000460696 WNT7AO00755 349 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 ZNF18P17022 549 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms