RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 COG1Q8WTW3 980 aa13.9□□□□□ -0.18
COL6A3-206ENST00000409809 RIOK1Q9BRS2 568 aaKnown RBP13.9□□□□□ -0.18
COL6A3-206ENST00000409809 GABPAQ06546 454 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 EPM2AIP1Q7L775 607 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-206ENST00000409809 YWHAGP61981 247 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL6A3-206ENST00000409809 RPS6KC1Q96S38 1066 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 RIMS2Q9UQ26 1411 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 CA4P22748 312 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 OSBPL5Q9H0X9 879 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-206ENST00000409809 TMEM247A6NEH6 219 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 GCNT3O95395 438 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 LUZP2Q86TE4 346 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 CROCCP3Q8IVE0 287 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 DISP3Q9P2K9 1392 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 LRIG3Q6UXM1 1119 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 GINS4Q9BRT9 223 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 MKL2Q9ULH7 1088 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 PLAAQ9Y263 795 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 CMTM5Q96DZ9 223 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 ETNK1Q9HBU6 452 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 LRWD1Q9UFC0 647 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 UBN2Q6ZU65 1347 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 PFKFB2O60825 505 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 NDUFA10O95299 355 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 BEND6Q5SZJ8 279 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-206ENST00000409809 NCAPG2Q86XI2 1143 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 ECT2Q9H8V3 914 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 FANCLQ9NW38 375 aa13.89□□□□□ -0.19
COL6A3-206ENST00000409809 MYO1FO00160 1098 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 SKAP1Q86WV1 359 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 NRDE2Q9H7Z3 1164 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 MAP3K5Q99683 1374 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 MYO5CQ9NQX4 1742 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 TRIM16LQ309B1 348 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 KPNA7A9QM74 516 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 TMED2Q15363 201 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 ANGPT1Q15389 498 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 TLK2Q86UE8 772 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 NAF1Q96HR8 494 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 THAP9Q9H5L6 903 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 SMG5Q9UPR3 1016 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 ZMYM6O95789 1325 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 GOLGA8JA6NMD2 632 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 TAC1P20366 129 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 IL10P22301 178 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 GGCXP38435 758 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 ZNF174Q15697 407 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 CNPY3Q9BT09 278 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 CDV3Q9UKY7 258 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 PPIP5K2O43314 1243 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 HAUS5O94927 633 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 MFN1Q8IWA4 741 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 PBXIP1Q96AQ6 731 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 DACH2Q96NX9 599 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 GOLGA4Q13439 2230 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 SERPING1P05155 500 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 HSPA1AP0DMV8 641 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 HSPA1BP0DMV9 641 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 ATF7P17544 494 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 PRR23D1E9PI22 279 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 H3BRJ5 948 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 PRR23D2P0DMB1 279 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 DDX5P17844 614 aaKnown RBP13.88□□□□□ -0.19
COL6A3-206ENST00000409809 RASSF3Q86WH2 238 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 TRIM59Q8IWR1 403 aa13.88□□□□□ -0.19
COL6A3-206ENST00000409809 DNAJC9Q8WXX5 260 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 PDLIM2Q96JY6 352 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 TUBGCP2Q9BSJ2 902 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ASPSCR1Q9BZE9 553 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 SLITRK6Q9H5Y7 841 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 SEC24BO95487 1268 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 LETM2Q2VYF4 491 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 TRMT10CQ7L0Y3 403 aaKnown RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 APPBP2Q92624 585 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ALKBH8Q96BT7 664 aaKnown RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ATG3Q9NT62 314 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 SERPINB3P29508 390 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ZBTB18Q99592 522 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 RPN1P04843 607 aaKnown RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 TCEANC2Q96MN5 208 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ABCC10Q5T3U5 1492 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 CLEC17AQ6ZS10 378 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 CDR2LQ86X02 465 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 DPH5Q9H2P9 285 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 TLK1Q9UKI8 766 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ADGRA3Q8IWK6 1321 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 PSMA4P25789 261 aaKnown RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 MAN2A1Q16706 1144 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 KAZNQ674X7 775 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 KRT40Q6A162 431 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 TGS1Q96RS0 853 aaKnown RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ETAA1Q9NY74 926 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 TSPY1Q01534 308 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 LAMC2Q13753 1193 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 HIC1Q14526 733 aa13.87□□□□□ -0.19
COL6A3-206ENST00000409809 THUMPD2Q9BTF0 503 aaKnown RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 FOXP1Q9H334 677 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-206ENST00000409809 ADCY7P51828 1080 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms