RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 THAP3Q8WTV1 239 aaPredicted RBP0.78□□□□□ -2.28
RNU6-540P-201ENST00000384622 CCDC74AQ96AQ1 378 aa0.78□□□□□ -2.28
RNU6-540P-201ENST00000384622 NUDT11Q96G61 164 aa0.78□□□□□ -2.28
RNU6-540P-201ENST00000384622 C12orf65Q9H3J6 166 aaKnown RBP0.78□□□□□ -2.28
RNU6-540P-201ENST00000384622 EBF3Q9H4W6 596 aa0.78□□□□□ -2.28
RNU6-540P-201ENST00000384622 FZD1Q9UP38 647 aa0.78□□□□□ -2.28
RNU6-540P-201ENST00000384622 NOTCH4Q99466 2003 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 SPRY2O43597 315 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 PRAMEF1O95521 474 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 CHMP4BP1P59074 171 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 DUSP8Q13202 625 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 AAMPQ13685 434 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 CNGB1Q14028 1251 aaPredicted RBP0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 EZH2Q15910 746 aaKnown RBP0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 PDZRN4Q6ZMN7 1036 aaPredicted RBP0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 ACRBPQ8NEB7 543 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 DBF4BQ8NFT6 615 aa0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 NGRNQ9NPE2 291 aaKnown RBP0.77□□□□□ -2.29
RNU6-540P-201ENST00000384622 PPFIA4O75335 1185 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 CELA3AP09093 270 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 VAV1P15498 845 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 TYRP1P17643 537 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 HOXC13P31276 330 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 CSF2RBP32927 897 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 EIF1AXP47813 144 aaKnown RBP0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 NOVP48745 357 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 CDK8P49336 464 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 ZNF134P52741 427 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 NKX3-2P78367 333 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 E2F1Q01094 437 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 PTPN11Q06124 597 aaPredicted RBP0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 TOB2Q14106 344 aaPredicted RBP0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 OCLNQ16625 522 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 ZNF260Q3ZCT1 412 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 FKBP15Q5T1M5 1219 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 KIAA1614Q5VZ46 1190 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 SPTY2D1Q68D10 685 aaPredicted RBP0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 Q6YL49 198 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 ADGRE4PQ86SQ3 457 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 MIB1Q86YT6 1006 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 D2HGDHQ8N465 521 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 FBXO18Q8NFZ0 1043 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 CAGE1Q8TC20 777 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 C16orf92Q96LL3 132 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 PPP4R2Q9NY27 417 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 TLK1Q9UKI8 766 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 CYP8B1Q9UNU6 501 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 AKAP2Q9Y2D5 859 aa0.76□□□□□ -2.29
RNU6-540P-201ENST00000384622 MEIS1O00470 390 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 SMAD6O43541 496 aaKnown RBP0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 TADA3O75528 432 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 KLHL18O94889 574 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 CELA2AP08217 269 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 STAT5AP42229 794 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 RNF151Q2KHN1 245 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 LRRC55Q6ZSA7 311 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 ARHGEF25Q86VW2 580 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 RGS22Q8NE09 1264 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 ACSF2Q96CM8 615 aaPredicted RBP0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 AJUBAQ96IF1 538 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 WRNIP1Q96S55 665 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 TFIP11Q9UBB9 837 aaKnown RBP0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 MINPP1Q9UNW1 487 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 SIT1Q9Y3P8 196 aa0.75□□□□□ -2.29
RNU6-540P-201ENST00000384622 UPK3BL1B0FP48 263 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 UPK3BL2E5RIL1 263 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 SIGLEC6O43699 453 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 PAGE1O75459 146 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 GSTM1P09488 218 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 XRCC5P13010 732 aaKnown RBP0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 L1CAMP32004 1257 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 AVPR1BP47901 424 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 YARSP54577 528 aaKnown RBP0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 PDE4BQ07343 736 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 USP10Q14694 798 aaKnown RBP0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 CR1LQ2VPA4 569 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 HDGFL1Q5TGJ6 251 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 RASIP1Q5U651 963 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 PI16Q6UXB8 463 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 CYP2R1Q6VVX0 501 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 C18orf65Q6ZTR6 163 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 LZTR1Q8N653 840 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 FAM13CQ8NE31 585 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 DDB2Q92466 427 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 CAVIN3Q969G5 261 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 MARK4Q96L34 752 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 CTAGE1Q96RT6 745 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 CHST7Q9NS84 486 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 PTPN22Q9Y2R2 807 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 CCDC9Q9Y3X0 531 aaKnown RBP0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 MAFBQ9Y5Q3 323 aaPredicted RBP0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 KLF2Q9Y5W3 355 aaPredicted RBP0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 HS3ST4Q9Y661 456 aa0.74□□□□□ -2.29
RNU6-540P-201ENST00000384622 ZNF804BA4D1E1 1349 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 LRRC3CA6NJW4 275 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 GFRA2O00451 464 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 PLA2G5P39877 138 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 SCNN1GP51170 649 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 ADCY1Q08828 1119 aa0.73□□□□□ -2.29
RNU6-540P-201ENST00000384622 SNW1Q13573 536 aaKnown RBP0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms