RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 NAA30Q147X3 362 aaPredicted RBP24.02■■□□□ 1.44
TRIM54-202ENST00000380075 CDC37Q16543 378 aaPredicted RBP24.02■■□□□ 1.44
TRIM54-202ENST00000380075 ABCB5Q2M3G0 1257 aa24.02■■□□□ 1.44
TRIM54-202ENST00000380075 MIGA2Q7L4E1 593 aa24.02■■□□□ 1.44
TRIM54-202ENST00000380075 RETREG2Q8NC44 543 aa24.02■■□□□ 1.44
TRIM54-202ENST00000380075 DESI2Q9BSY9 194 aa24.02■■□□□ 1.44
TRIM54-202ENST00000380075 NUP58Q9BVL2 599 aa24.02■■□□□ 1.44
TRIM54-202ENST00000380075 PCDHA1Q9Y5I3 950 aa24.02■■□□□ 1.44
TRIM54-202ENST00000380075 MTF1Q14872 753 aa24.02■■□□□ 1.43
TRIM54-202ENST00000380075 HYIQ5T013 277 aa24.02■■□□□ 1.43
TRIM54-202ENST00000380075 NT5C3AQ9H0P0 336 aa24.02■■□□□ 1.43
TRIM54-202ENST00000380075 SSC5DA1L4H1 1573 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 CYP3A7-CYP3A51PA0A087WV96 503 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 MYMKA6NI61 221 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 MARCH6O60337 910 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 FGFR1OPO95684 399 aaKnown RBP24.01■■□□□ 1.43
TRIM54-202ENST00000380075 CYP3A7P24462 503 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 KRT9P35527 623 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 MCM6Q14566 821 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 CENPPQ6IPU0 288 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 HAS1Q92839 578 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 IQCDQ96DY2 449 aa24.01■■□□□ 1.43
TRIM54-202ENST00000380075 POTEMA6NI47 508 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 ANKRD40Q6AI12 368 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 TEX2Q8IWB9 1127 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 GUF1Q8N442 669 aaKnown RBP24■■□□□ 1.43
TRIM54-202ENST00000380075 KIAA0895Q8NCT3 520 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 TUBGCP2Q9BSJ2 902 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 MRPL44Q9H9J2 332 aaKnown RBP24■■□□□ 1.43
TRIM54-202ENST00000380075 PCDHA12Q9UN75 941 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 ABCB11O95342 1321 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 FCER1AP12319 257 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 NF2P35240 595 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 ELF2Q15723 593 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 SIAH1Q8IUQ4 282 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 MNS1Q8NEH6 495 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 OR8K1Q8NGG5 319 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 KIFC2Q96AC6 838 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 MBOAT7Q96N66 472 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 CAPN11Q9UMQ6 739 aa24■■□□□ 1.43
TRIM54-202ENST00000380075 FAM196BA6NMK8 535 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 F5H6K3 240 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 FANCGO15287 622 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 KIF5CO60282 957 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 MAP3K9P80192 1104 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 KLRC3Q07444 240 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 MOB2Q70IA6 237 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 CNOT6LQ96LI5 555 aaKnown RBP23.99■■□□□ 1.43
TRIM54-202ENST00000380075 WDR24Q96S15 920 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 AMNQ9BXJ7 453 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 ANO3Q9BYT9 981 aa23.99■■□□□ 1.43
TRIM54-202ENST00000380075 LUC7L2Q9Y383 392 aaKnown RBP23.99■■□□□ 1.43
TRIM54-202ENST00000380075 PRKCSHP14314 528 aaPredicted RBP23.98■■□□□ 1.43
TRIM54-202ENST00000380075 TUBB2AQ13885 445 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 TSR1Q2NL82 804 aaKnown RBP23.98■■□□□ 1.43
TRIM54-202ENST00000380075 DNAJC7Q99615 494 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 TUBB2BQ9BVA1 445 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 HERC5Q9UII4 1024 aaKnown RBP23.98■■□□□ 1.43
TRIM54-202ENST00000380075 EFCAB8A8MWE9 144 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 ERVK-24P63145 666 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 LRRC63Q05C16 580 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 SLFN12Q8IYM2 578 aa23.98■■□□□ 1.43
TRIM54-202ENST00000380075 RAD21O60216 631 aa23.97■■□□□ 1.43
TRIM54-202ENST00000380075 FOSP01100 380 aaPredicted RBP23.97■■□□□ 1.43
TRIM54-202ENST00000380075 EHHADHQ08426 723 aa23.97■■□□□ 1.43
TRIM54-202ENST00000380075 BTNL9Q6UXG8 535 aa23.97■■□□□ 1.43
TRIM54-202ENST00000380075 KCNMB3Q9NPA1 279 aa23.97■■□□□ 1.43
TRIM54-202ENST00000380075 MYO1AQ9UBC5 1043 aa23.97■■□□□ 1.43
TRIM54-202ENST00000380075 MRFAP1Q9Y605 127 aa23.97■■□□□ 1.43
TRIM54-202ENST00000380075 TTC26A0AVF1 554 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 USP2O75604 605 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 NDUFB10O96000 172 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 TRAF1Q13077 416 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 TTLL12Q14166 644 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 FIGNQ5HY92 759 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 SYDE2Q5VT97 1194 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 HOOK2Q96ED9 719 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 GBA2Q9HCG7 927 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 SLC39A2Q9NP94 309 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 BMP2KQ9NSY1 1161 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 STK24Q9Y6E0 443 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 PES1O00541 588 aaKnown RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 TBX3O15119 743 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 PPP1R12BO60237 982 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 MTIF2P46199 727 aaKnown RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 MAP3K10Q02779 954 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 FBXO11Q86XK2 927 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 UBXN4Q92575 508 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 DDX12PQ92771 950 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 ERGIC2Q96RQ1 377 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 NUDT12Q9BQG2 462 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 SEMA6BQ9H3T3 888 aa23.96■■□□□ 1.43
TRIM54-202ENST00000380075 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 V9GYY5 206 aaPredicted RBP23.96■■□□□ 1.43
TRIM54-202ENST00000380075 MYH7BA7E2Y1 1941 aa23.95■■□□□ 1.43
TRIM54-202ENST00000380075 B4DLN1 442 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L15C9J2P7 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L13C9JLJ4 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L11C9JVI0 530 aa23.95■■□□□ 1.42
TRIM54-202ENST00000380075 USP17L18D6R9N7 530 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms