RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TCP1P17987 556 aaKnown RBP14.87□□□□□ -0.03
COL4A1-201ENST00000375820 CDCA7Q9BWT1 371 aaPredicted RBP14.87□□□□□ -0.03
COL4A1-201ENST00000375820 HEXIM1O94992 359 aaKnown RBP14.87□□□□□ -0.03
COL4A1-201ENST00000375820 MSH2P43246 934 aa14.87□□□□□ -0.03
COL4A1-201ENST00000375820 DPCR1Q3MIW9 517 aa14.87□□□□□ -0.03
COL4A1-201ENST00000375820 OR6B2Q6IFH4 312 aa14.87□□□□□ -0.03
COL4A1-201ENST00000375820 ZNF710Q8N1W2 664 aa14.87□□□□□ -0.03
COL4A1-201ENST00000375820 RPGRIP1Q96KN7 1286 aa14.87□□□□□ -0.03
COL4A1-201ENST00000375820 SRGAP2CP0DJJ0 459 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 SOX5P35711 763 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 THOC5Q13769 683 aaKnown RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 KCTD2Q14681 263 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 DEPDC1BQ8WUY9 529 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ZSWIM6Q9HCJ5 1215 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 SEC31BQ9NQW1 1179 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 HOXA13P31271 388 aaPredicted RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 C10orf76Q5T2E6 689 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ZNF449Q6P9G9 518 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 PI16Q6UXB8 463 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ARHGEF18Q6ZSZ5 1173 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ZBTB38Q8NAP3 1195 aaPredicted RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 GANCQ8TET4 914 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 CEP170P1Q96L14 293 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 PPEF1O14829 653 aaPredicted RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ATP2B4P23634 1241 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 FAM186BQ8IYM0 893 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 MAML1Q92585 1016 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 DYNLL2Q96FJ2 89 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ZNF804BA4D1E1 1349 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 SOS2Q07890 1332 aaPredicted RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 EIF2AK4Q9P2K8 1649 aaKnown RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ANTXR1Q9H6X2 564 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 GCNT4Q9P109 453 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 MOSPD1Q9UJG1 213 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 POLIQ9UNA4 740 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 PCDHA5Q9Y5H7 936 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 MAPKBP1O60336 1514 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 AFPP02771 609 aaKnown RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 PROSER3Q2NL68 480 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ZNF589Q86UQ0 364 aaPredicted RBP14.86□□□□□ -0.03
COL4A1-201ENST00000375820 MAP7D3Q8IWC1 876 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 TBCKQ8TEA7 893 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 ZMYM3Q14202 1370 aa14.86□□□□□ -0.03
COL4A1-201ENST00000375820 PSMC2P35998 433 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 HDLBPQ00341 1268 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 NSUN2Q08J23 767 aaKnown RBP eCLIP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 DCAF15Q66K64 600 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 KIAA1841Q6NSI8 718 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 CYTH2Q99418 400 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 FAN1Q9Y2M0 1017 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 TYW5A2RUC4 315 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 PRAMEF22A3QJZ6 481 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 DDAH1O94760 285 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 NR5A1Q13285 461 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 MARCH10Q8NA82 808 aaPredicted RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 SUN1O94901 812 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 PLS3P13797 630 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 TFDP1Q14186 410 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 USP17L2Q6R6M4 530 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 UNC5CLQ8IV45 518 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 CCDC197Q8NCU1 140 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 HEXIM2Q96MH2 286 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 HAUS4Q9H6D7 363 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 PI4K2BG5E9Z4 385 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 RAD17O75943 681 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 LONP1P36776 959 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 PRPF38AQ8NAV1 312 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 CPSF3Q9UKF6 684 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 PCDHA4Q9UN74 947 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 CFAP65Q6ZU64 1925 aaKnown RBP14.85□□□□□ -0.03
COL4A1-201ENST00000375820 MCF2LO15068 1137 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 METTL23Q86XA0 190 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 CCDC138Q96M89 665 aa14.85□□□□□ -0.03
COL4A1-201ENST00000375820 PTPREP23469 700 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 YWHAHQ04917 246 aaPredicted RBP14.84□□□□□ -0.03
COL4A1-201ENST00000375820 RWDD4Q6NW29 188 aaKnown RBP14.84□□□□□ -0.03
COL4A1-201ENST00000375820 SRGAP2BP0DMP2 458 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 SUFUQ9UMX1 484 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 DAAM1Q9Y4D1 1078 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 UHRF1BP1Q6BDS2 1440 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 PFDN1O60925 122 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 ETF1P62495 437 aaKnown RBP14.84□□□□□ -0.03
COL4A1-201ENST00000375820 ANO4Q32M45 955 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 ATICP31939 592 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 CTTNQ14247 550 aaKnown RBP14.84□□□□□ -0.03
COL4A1-201ENST00000375820 MIS18BP1Q6P0N0 1132 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 KRT27Q7Z3Y8 459 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 IL17REQ8NFR9 667 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 SAMSN1Q9NSI8 373 aaKnown RBP14.84□□□□□ -0.03
COL4A1-201ENST00000375820 KCNG1Q9UIX4 513 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 RAPGEF6Q8TEU7 1601 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 KRT26Q7Z3Y9 468 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 PCGF5Q86SE9 256 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 RASEFQ8IZ41 740 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 POLD4Q9HCU8 107 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 MAN1B1Q9UKM7 699 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 ORC6Q9Y5N6 252 aa14.84□□□□□ -0.03
COL4A1-201ENST00000375820 EPHB1P54762 984 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 KRT33BQ14525 404 aa14.83□□□□□ -0.03
COL4A1-201ENST00000375820 ZNF394Q53GI3 561 aa14.83□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms