RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 LRRC41Q15345 812 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 SLC15A2Q16348 729 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 EXOC8Q8IYI6 725 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 P2RX5Q93086 422 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 NSUN4Q96CB9 384 aaKnown RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 CEMIPQ8WUJ3 1361 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 SLC4A1P02730 911 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 CYB5R4Q7L1T6 521 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 CROCC2H7BZ55 1655 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 XPOTO43592 962 aaKnown RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 PSAPP07602 524 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 H2AFZP0C0S5 128 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 CYP2B6P20813 491 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 COPB1P53618 953 aaKnown RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 PFKFB3Q16875 520 aaPredicted RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 MFSD14CQ5VZR4 134 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 H2AFVQ71UI9 128 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 SLC16A10Q8TF71 515 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 KMT5AQ9NQR1 393 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 F5H6K3 240 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 ORC4O43929 436 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 NMT2O60551 498 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 PIK3CAP42336 1068 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 MXRA7P84157 204 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 KLRC3Q07444 240 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 ACCSQ96QU6 501 aa12.68□□□□□ -0.38
SYNE1-204ENST00000367248 NSRP1Q9H0G5 558 aaKnown RBP12.68□□□□□ -0.38
SYNE1-204ENST00000367248 LACTBP83111 547 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 STRIP1Q5VSL9 837 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 CNOT6LQ96LI5 555 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 PLEKHA4Q9H4M7 779 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 STK10O94804 968 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 EEF1GP26641 437 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 FKBP3Q00688 224 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 EXOC3L4Q17RC7 722 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 TTC30BQ8N4P2 665 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 ATRIPQ8WXE1 791 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 ZNF653Q96CK0 615 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 MMP19Q99542 508 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 TUBGCP2Q9BSJ2 902 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 NXF1Q9UBU9 619 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 HERC5Q9UII4 1024 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 FNDC3AQ9Y2H6 1198 aaKnown RBP12.67□□□□□ -0.38
SYNE1-204ENST00000367248 SPHKAPQ2M3C7 1700 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 FAM149B1Q96BN6 582 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 ASIC3Q9UHC3 531 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 FEM1BQ9UK73 627 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 GRM4Q14833 912 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 METTL23Q86XA0 190 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 NT5C1BQ96P26 610 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 TRERF1Q96PN7 1200 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 FAM186BQ8IYM0 893 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 PFDN4Q9NQP4 134 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 RNF146Q9NTX7 359 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 STK36Q9NRP7 1315 aa12.67□□□□□ -0.38
SYNE1-204ENST00000367248 DENND3A2RUS2 1198 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 AKR1B1P15121 316 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 C9orf131Q5VYM1 1079 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 C17orf53Q8N3J3 647 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 LBHD1Q9BQE6 289 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 CARD6Q9BX69 1037 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 MIS12Q9H081 205 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 GRAMD1CQ8IYS0 662 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 SELENOSQ9BQE4 189 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 CAMSAP1Q5T5Y3 1602 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 E9PCH4 1651 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 A0A087WWV3 80 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 UPP2O95045 317 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 GMPSP49915 693 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 PDE6CP51160 858 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 TDRD7Q8NHU6 1098 aaKnown RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 RMDN3Q96TC7 470 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 BHMT2Q9H2M3 363 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 TMEM206Q9H813 350 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP42Q9H9J4 1324 aaKnown RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 CCNE1P24864 410 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 PDIA6Q15084 440 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 DPCR1Q3MIW9 517 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 C12orf60Q5U649 245 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 CATSPER4Q7RTX7 472 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 IKBKBO14920 756 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 PLA2G4BP0C869 781 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 CLUL1Q15846 466 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 PPP1R18Q6NYC8 613 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 SKA2Q8WVK7 121 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 EPSTI1Q96J88 318 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 HAUS4Q9H6D7 363 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 CDC42BPBQ9Y5S2 1711 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L15C9J2P7 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L13C9JLJ4 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L11C9JVI0 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L18D6R9N7 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L22D6RA61 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L17D6RBQ6 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L19D6RCP7 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L20D6RJB6 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 PLCG1P19174 1290 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 PSMC2P35998 433 aaKnown RBP12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L24Q0WX57 530 aa12.66□□□□□ -0.38
SYNE1-204ENST00000367248 USP17L6PQ6QN14 398 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms