RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DSCC1Q9BVC3 393 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 DYTNA2CJ06 578 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CTCFP49711 727 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 BEND6Q5SZJ8 279 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 HNRNPCL2B2RXH8 293 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 KLHL23Q8NBE8 558 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CCDC28BQ9BUN5 200 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 GSTA4O15217 222 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CHEK2O96017 543 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 TMED8Q6PL24 325 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 AHCYL1O43865 530 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 MT-ND3P03897 115 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 STAM2O75886 525 aa13.58□□□□□ -0.23
COL6A3-203ENST00000353578 S100A1P23297 94 aa13.58□□□□□ -0.23
COL6A3-203ENST00000353578 COPB1P53618 953 aaKnown RBP13.58□□□□□ -0.23
COL6A3-203ENST00000353578 ST13P5Q8NFI4 369 aaPredicted RBP13.58□□□□□ -0.23
COL6A3-203ENST00000353578 EPM2AIP1Q7L775 607 aaPredicted RBP13.58□□□□□ -0.23
COL6A3-203ENST00000353578 ZSCAN29Q8IWY8 852 aaPredicted RBP13.58□□□□□ -0.23
COL6A3-203ENST00000353578 RHOT2Q8IXI1 618 aa13.58□□□□□ -0.23
COL6A3-203ENST00000353578 PDIK1LQ8N165 341 aa13.58□□□□□ -0.23
COL6A3-203ENST00000353578 MAML1Q92585 1016 aa13.58□□□□□ -0.23
COL6A3-203ENST00000353578 NDUFA10O95299 355 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 TNNC2P02585 160 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 NLRP11P59045 1033 aaKnown RBP13.58□□□□□ -0.24
COL6A3-203ENST00000353578 PBXIP1Q96AQ6 731 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.58□□□□□ -0.24
COL6A3-203ENST00000353578 RSPH1Q8WYR4 309 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 CFAP74Q9C0B2 1584 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 CABP5Q9NP86 173 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 H7C0S8 307 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 GRM1Q13255 1194 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 TGS1Q96RS0 853 aaKnown RBP13.58□□□□□ -0.24
COL6A3-203ENST00000353578 SETD3Q86TU7 594 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-203ENST00000353578 MAP3K2Q9Y2U5 619 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 CBFA2T3O75081 653 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 AGTP01019 485 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 MARK3P27448 753 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 BTBD7Q9P203 1132 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.58□□□□□ -0.24
COL6A3-203ENST00000353578 IL10P22301 178 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 THAP9Q9H5L6 903 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 LAMC1P11047 1609 aa13.58□□□□□ -0.24
COL6A3-203ENST00000353578 GOLGA8JA6NMD2 632 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 HIC1Q14526 733 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 CDR2LQ86X02 465 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 ZNF713Q8N859 430 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 RBM42Q9BTD8 480 aaKnown RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 IFNA8P32881 189 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 EHHADHQ08426 723 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 ZBTB41Q5SVQ8 909 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 TRIM69Q86WT6 500 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 CAAP1Q9H8G2 361 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 STX8Q9UNK0 236 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 CARD10Q9BWT7 1032 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 WWP1Q9H0M0 922 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 FAM207AQ9NSI2 230 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 ANAPC5Q9UJX4 755 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 CA4P22748 312 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 SYDE1Q6ZW31 735 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 SH3GL1Q99961 368 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 TLK1Q9UKI8 766 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 INPP5AQ14642 412 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 TAF1DQ9H5J8 278 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 FANCEQ9HB96 536 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 KRT82Q9NSB4 513 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 GTPBP10A4D1E9 387 aaKnown RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 CDC27P30260 824 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 RNASE9P60153 205 aaKnown RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 PLA2G4DQ86XP0 818 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 SIKE1Q9BRV8 207 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 PARVGQ9HBI0 331 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 DNAJC12Q9UKB3 198 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 USP15Q9Y4E8 981 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 PRR23D1E9PI22 279 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 PRR23D2P0DMB1 279 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 PCNX4Q63HM2 1172 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 DHX38Q92620 1227 aaKnown RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 BIN2Q9UBW5 565 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 MYOCDQ8IZQ8 938 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 CCT8L2Q96SF2 557 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 LSM14BQ9BX40 385 aaKnown RBP13.57□□□□□ -0.24
COL6A3-203ENST00000353578 SUN2Q9UH99 717 aa13.57□□□□□ -0.24
COL6A3-203ENST00000353578 DCTN2Q13561 401 aaKnown RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 TTLL11Q8NHH1 800 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 O00370 1275 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 DDIT3P35638 169 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 HAND2P61296 217 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 PDCLQ13371 301 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 TEKT4Q8WW24 435 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 OLFM1Q99784 485 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 FTOQ9C0B1 505 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 S100A9P06702 114 aaKnown RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 RUNX1T1Q06455 604 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 DHX34Q14147 1143 aaKnown RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 PNMA2Q9UL42 364 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 PCDHB13Q9Y5F0 798 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 SNX14Q9Y5W7 946 aa13.56□□□□□ -0.24
COL6A3-203ENST00000353578 AASDHQ4L235 1098 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-203ENST00000353578 DACH2Q96NX9 599 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms