RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 LONRF2Q1L5Z9 754 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 PRR16Q569H4 304 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 FAM26FQ5R3K3 315 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 GPBP1Q86WP2 473 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 SIAH1Q8IUQ4 282 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 SMCR8Q8TEV9 937 aaPredicted RBP16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 P2RX7Q99572 595 aaKnown RBP16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 SIK3Q9Y2K2 1263 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 F5H6K3 240 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 TRAF5O00463 557 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 KRT86O43790 486 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 PLA2G4BP0C869 781 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 LRRC63Q05C16 580 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 KLRC3Q07444 240 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 TUBB2AQ13885 445 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 RRAGAQ7L523 313 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 SPICE1Q8N0Z3 855 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 TUBB2BQ9BVA1 445 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 LRRC27Q9C0I9 530 aa16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 DHX36Q9H2U1 1008 aaKnown RBP16.53■□□□□ 0.24
VIPAS39-202ENST00000343765 POTEFA5A3E0 1075 aa16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 FGFR1OPO95684 399 aaKnown RBP16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 POTEIP0CG38 1075 aa16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 STRIP1Q5VSL9 837 aa16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 POTEGQ6S5H5 508 aa16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 POTEEQ6S8J3 1075 aa16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 DCAF4Q8WV16 495 aa16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 BMP2KQ9NSY1 1161 aaPredicted RBP16.52■□□□□ 0.24
VIPAS39-202ENST00000343765 NRXN2Q9P2S2 1712 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 EIF3CLB5ME19 914 aaKnown RBP16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 MEIS1O00470 390 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 PSMD14O00487 310 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 ZNF263O14978 683 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 KRT18P05783 430 aaKnown RBP16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 EHHADHQ08426 723 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 ABCB5Q2M3G0 1257 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 CCDC40Q4G0X9 1142 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 EIF3CQ99613 913 aaKnown RBP16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 DEF6Q9H4E7 631 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 NYAP2Q9P242 653 aa16.52■□□□□ 0.23
VIPAS39-202ENST00000343765 A0A1W2PQJ5 194 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 CCDC151A5D8V7 595 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 MEIS2O14770 477 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 MED24O75448 989 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 JAG1P78504 1218 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 SPA17Q15506 151 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 HERC4Q5GLZ8 1057 aaPredicted RBP16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 TRAPPC11Q7Z392 1133 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 CCDC170Q8IYT3 715 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 DRC1Q96MC2 740 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 FUT8Q9BYC5 575 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 SUGCTQ9HAC7 445 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 ZCCHC17Q9NP64 241 aaKnown RBP16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 ARHGAP20Q9P2F6 1191 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 KDM3AQ9Y4C1 1321 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 LRRC53A6NM62 1247 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 NDUFB10O96000 172 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 GH2P01242 217 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 HOXA13P31271 388 aaPredicted RBP16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 ARHGAP4P98171 946 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 PSMD2Q13200 908 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 NT5C3AQ9H0P0 336 aa16.51■□□□□ 0.23
VIPAS39-202ENST00000343765 H0YIN7 160 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 EIF4A3P38919 411 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 VSNL1P62760 191 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 BRD3Q15059 726 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 FIGNQ5HY92 759 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 IDI2Q9BXS1 227 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 KCNMB3Q9NPA1 279 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 SAR1BQ9Y6B6 198 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 OAS2P29728 719 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 KIF5AQ12840 1032 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 SMC1AQ14683 1233 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 TMEM179Q6ZVK1 233 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 CCDC65Q8IXS2 484 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 MKL1Q969V6 931 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 MMS19Q96T76 1030 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 NLRC4Q9NPP4 1024 aa16.5■□□□□ 0.23
VIPAS39-202ENST00000343765 SCN9AQ15858 1988 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 ZNF185O15231 689 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 SAMD1Q6SPF0 538 aaPredicted RBP16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 CACNA2D4Q7Z3S7 1137 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 FBXO11Q86XK2 927 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 MSANTD4Q8NCY6 345 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 CRACR2AQ9BSW2 395 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 AMNQ9BXJ7 453 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 IFIH1Q9BYX4 1025 aaKnown RBP16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 POLD4Q9HCU8 107 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 ABCB6Q9NP58 842 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 PLAGL2Q9UPG8 496 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 COL4A3BPQ9Y5P4 624 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 C10orf71Q711Q0 1435 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 AKR1B10O60218 316 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 CYP11B2P19099 503 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 KIF11P52732 1056 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 VAV2P52735 878 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 FKBP3Q00688 224 aaKnown RBP16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 APBA1Q02410 837 aa16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 CCDC84Q86UT8 332 aaPredicted RBP16.49■□□□□ 0.23
VIPAS39-202ENST00000343765 NEK11Q8NG66 645 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms