RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CNGA2Q16280 664 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 SPATA1Q5VX52 437 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 SLFN12Q8IYM2 578 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 TMEM63CQ9P1W3 806 aa6.65□□□□□ -1.34
CSMD1-201ENST00000335551 PRG3Q9Y2Y8 225 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-201ENST00000335551 DENND4BO75064 1496 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 RGS12O14924 1447 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 H7C0C1 242 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 ATP5OP48047 213 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 AOC3Q16853 763 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 CENPUQ71F23 418 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 NGLY1Q96IV0 654 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 TRIM45Q9H8W5 580 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 RPRD2Q5VT52 1461 aaKnown RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 TYW5A2RUC4 315 aaKnown RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 LRRIQ3A6PVS8 624 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 PFKFB1P16118 471 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 GPTP24298 496 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 MYSM1Q5VVJ2 828 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 TTBK2Q6IQ55 1244 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 CYP4F22Q6NT55 531 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 GTPBP6O43824 516 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 RHOBTB1O94844 696 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 YARSP54577 528 aaKnown RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 MRPS35P82673 323 aaKnown RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 KIF23Q02241 960 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 RASSF7Q02833 373 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 YWHAHQ04917 246 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 SLC12A1Q13621 1099 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 KIF19Q2TAC6 998 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 TRIM16LQ309B1 348 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 KSR2Q6VAB6 950 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 EPAS1Q99814 870 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 UBE4BO95155 1302 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 KRT19P08727 400 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 CDH2P19022 906 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 PMLP29590 882 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 ITKQ08881 620 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 EPM2AIP1Q7L775 607 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-201ENST00000335551 KSR1Q8IVT5 923 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 ZNF555Q8NEP9 628 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 DEPDC1BQ8WUY9 529 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 MRGBPQ9NV56 204 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 FAM135BQ49AJ0 1406 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 SBNO2Q9Y2G9 1366 aa6.65□□□□□ -1.35
CSMD1-201ENST00000335551 PLTPP55058 493 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 KIF22Q14807 665 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 KHDRBS2Q5VWX1 349 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ZBTB3Q9H5J0 574 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 C2orf54Q08AI8 447 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 WDR75Q8IWA0 830 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 TRIM63Q969Q1 353 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 MEIS3Q99687 375 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ELF1P32519 619 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 TMPRSS15P98073 1019 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 RUNX1T1Q06455 604 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ANGPTL8Q6UXH0 198 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 MCUQ8NE86 351 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 PARD6BQ9BYG5 372 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 BRD8Q9H0E9 1235 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 RWDD3Q9Y3V2 267 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 BIVM-ERCC5R4GMW8 1640 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 A0A1W2PQ27 194 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 A0A1W2PQ64 194 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 A0A1W2PQD8 194 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 STX3Q13277 289 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 FAM95CA0A1B0GW59 222 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 PRDM1O75626 825 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 MYL1P05976 194 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 LDHBP07195 334 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 KCNA3P22001 575 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 CMA1P23946 247 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 NUGGCQ68CJ6 796 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 GALNT17Q6IS24 598 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 TRIM67Q6ZTA4 783 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 NOSTRINQ8IVI9 506 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 PDIK1LQ8N165 341 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 BBS5Q8N3I7 341 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 MRPL50Q8N5N7 158 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 PHF21AQ96BD5 680 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ZSCAN32Q9NX65 697 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 PLB1Q6P1J6 1458 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 GMNCA6NCL1 334 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 MYO1FO00160 1098 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 TJAP1Q5JTD0 557 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 OLFML2BQ68BL8 750 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 DZIP3Q86Y13 1208 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 DIS3L2Q8IYB7 885 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 PARVBQ9HBI1 364 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 HSPD1P10809 573 aaKnown RBP6.64□□□□□ -1.35
CSMD1-201ENST00000335551 RXRAP19793 462 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 SLC35F6Q8N357 371 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 RAPGEF5Q92565 580 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 AZI2Q9H6S1 392 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ATP5J2-PTCD1G3V325 749 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ACSL3O95573 720 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 ST7Q9NRC1 585 aa6.64□□□□□ -1.35
CSMD1-201ENST00000335551 AP4S1Q9Y587 144 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms