RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 FRMPD2Q68DX3 1309 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 LMNAP02545 664 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 KRT26Q7Z3Y9 468 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 PLBD2Q8NHP8 589 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 CABLES1Q8TDN4 633 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 MAML1Q92585 1016 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 DHX38Q92620 1227 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 FAM227BQ96M60 508 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 CYTH2Q99418 400 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 AKT3Q9Y243 479 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ZNF532Q9HCE3 1301 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 MAP3K5Q99683 1374 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 A2MP01023 1474 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 PFKFB1P16118 471 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 KRT4P19013 534 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 PLTPP55058 493 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 PATL1Q86TB9 770 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 NDUFAF2Q8N183 169 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ZNF594Q96JF6 807 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 GCNAQ96QF7 691 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ZNF212Q9UDV6 495 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 TNNQ9UQP3 1299 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ATP8A1Q9Y2Q0 1164 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 NOS1P29475 1434 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ATP8B3O60423 1300 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 STK25O00506 426 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 PPIP5K2O43314 1243 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 OR52Z1P0C646 297 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 HSPD1P10809 573 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 EIF4A2Q14240 407 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 DDX17Q92841 729 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 ARHGEF1Q92888 912 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 GSDMAQ96QA5 445 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 TBK1Q9UHD2 729 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 DISP1Q96F81 1524 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 WDR91A4D1P6 747 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 CTNND1O60716 968 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 FAM26FQ5R3K3 315 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 FRA10AC1Q70Z53 315 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 NACC1Q96RE7 527 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 C14orf93Q9H972 538 aaKnown RBP11.22□□□□□ -0.61
CLIP1-201ENST00000302528 LRRC4Q9HBW1 653 aa11.22□□□□□ -0.61
CLIP1-201ENST00000302528 KRT8P05787 483 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 TAC1P20366 129 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 IDI1Q13907 227 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 TTLL7Q6ZT98 887 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 TTC30AQ86WT1 665 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 KCTD6Q8NC69 237 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 ENOX1Q8TC92 643 aaKnown RBP11.21□□□□□ -0.61
CLIP1-201ENST00000302528 CALN1Q9BXU9 219 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 STX18Q9P2W9 335 aaKnown RBP11.21□□□□□ -0.61
CLIP1-201ENST00000302528 L3MBTL1Q9Y468 752 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 JRKLQ9Y4A0 524 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 GADD45BO75293 160 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-201ENST00000302528 ZFXP17010 805 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-201ENST00000302528 ANXA13P27216 316 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 KCNA1Q09470 495 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 NEK8Q86SG6 692 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 FBXO11Q86XK2 927 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 EXOC8Q8IYI6 725 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 HIPK4Q8NE63 616 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 CCDC87Q9NVE4 849 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 FGFR1OP2Q9NVK5 253 aa11.21□□□□□ -0.61
CLIP1-201ENST00000302528 SEPT9Q9UHD8 586 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-201ENST00000302528 TRAPPC10P48553 1259 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 PPARAQ07869 468 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 POLA2Q14181 598 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 ODR4Q5SWX8 454 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 DCAF15Q66K64 600 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 C7orf31Q8N865 590 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 VPS39Q96JC1 886 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 EPN1Q9Y6I3 576 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-201ENST00000302528 KDM5CP41229 1560 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 JAK2O60674 1132 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 SPAG7O75391 227 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 MOCS3O95396 460 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 NSUN2Q08J23 767 aaKnown RBP eCLIP11.21□□□□□ -0.62
CLIP1-201ENST00000302528 Q3C1V9 767 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 KBTBD3Q8NAB2 608 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 RNF139Q8WU17 664 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 CCDC90BQ9GZT6 254 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 KIAA1468Q9P260 1216 aa11.21□□□□□ -0.62
CLIP1-201ENST00000302528 TMCC1O94876 653 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 HSPA4LO95757 839 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 CCDC159P0C7I6 412 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 ZNF654Q8IZM8 581 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 SIX6OS1Q8N1H7 587 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 STX19Q8N4C7 294 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 KIF17Q9P2E2 1029 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 STK17AQ9UEE5 414 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 ZSCAN9O15535 394 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-201ENST00000302528 SERPINB2P05120 415 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 HADHAP40939 763 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 SLMAPQ14BN4 828 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 ADALQ6DHV7 355 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 LRRC37BQ96QE4 947 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 ARHGEF6Q15052 776 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 DPP9Q86TI2 863 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 CCHCR1Q8TD31 782 aa11.2□□□□□ -0.62
CLIP1-201ENST00000302528 SLC26A7Q8TE54 656 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms