RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 JADE2Q9NQC1 790 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 KMT5AQ9NQR1 393 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 FKBP3Q00688 224 aaKnown RBP15.02□□□□□ -0.01
LDLR-201ENST00000252444 CCDC14Q49A88 953 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 MIGA2Q7L4E1 593 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 DYMQ7RTS9 669 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 REM2Q8IYK8 340 aaPredicted RBP15.02□□□□□ -0.01
LDLR-201ENST00000252444 SPICE1Q8N0Z3 855 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 RPAP3Q9H6T3 665 aaPredicted RBP15.02□□□□□ -0.01
LDLR-201ENST00000252444 GAKO14976 1311 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 CYP2D7A0A087X1C5 515 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 PLEKHA8P1O95397 391 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 CCNE1P24864 410 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 HVCN1Q96D96 273 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 POLLQ9UGP5 575 aa15.02□□□□□ -0.01
LDLR-201ENST00000252444 GAS2O43903 313 aaKnown RBP15.01□□□□□ -0.01
LDLR-201ENST00000252444 FERP16591 822 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 STAT1P42224 750 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 MFAP3P55082 362 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 RAPGEF1Q13905 1077 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 SMAP1Q8IYB5 467 aaPredicted RBP15.01□□□□□ -0.01
LDLR-201ENST00000252444 FAM212AQ96EL1 285 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 RMDN3Q96TC7 470 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 SPEF2Q9C093 1822 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 ARHGAP4P98171 946 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 U2AF2P26368 475 aaKnown RBP eCLIP15.01□□□□□ -0.013e-6■■■□□ 15.4
LDLR-201ENST00000252444 FKBP1BP68106 108 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 MAN2A1Q16706 1144 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 LEKR1Q6ZMV7 388 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 PHF20Q9BVI0 1012 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 STK10O94804 968 aaKnown RBP15.01□□□□□ -0.01
LDLR-201ENST00000252444 PLA2G4BP0C869 781 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 PSMC5P62195 406 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 KIAA1524Q8TCG1 905 aa15.01□□□□□ -0.01
LDLR-201ENST00000252444 RIOK1Q9BRS2 568 aaKnown RBP15.01□□□□□ -0.01
LDLR-201ENST00000252444 CXCL11O14625 94 aa15□□□□□ -0.01
LDLR-201ENST00000252444 KRT5P13647 590 aa15□□□□□ -0.01
LDLR-201ENST00000252444 ATP2A2P16615 1042 aaKnown RBP15□□□□□ -0.01
LDLR-201ENST00000252444 ERO1BQ86YB8 467 aa15□□□□□ -0.01
LDLR-201ENST00000252444 CCDC26Q8TAB7 109 aa15□□□□□ -0.01
LDLR-201ENST00000252444 TLR3O15455 904 aaKnown RBP15□□□□□ -0.01
LDLR-201ENST00000252444 SLC16A2P36021 539 aa15□□□□□ -0.01
LDLR-201ENST00000252444 ATP2C1P98194 919 aaPredicted RBP15□□□□□ -0.01
LDLR-201ENST00000252444 PNOCQ13519 176 aa15□□□□□ -0.01
LDLR-201ENST00000252444 KCNH4Q9UQ05 1017 aa15□□□□□ -0.01
LDLR-201ENST00000252444 ZNF233A6NK53 670 aa15□□□□□ -0.01
LDLR-201ENST00000252444 PHKA2P46019 1235 aa15□□□□□ -0.01
LDLR-201ENST00000252444 EIF4ENIF1Q9NRA8 985 aaKnown RBP15□□□□□ -0.01
LDLR-201ENST00000252444 FEZ2Q9UHY8 353 aaPredicted RBP15□□□□□ -0.01
LDLR-201ENST00000252444 NDUFA8P51970 172 aa15□□□□□ -0.01
LDLR-201ENST00000252444 CEP170P1Q96L14 293 aa15□□□□□ -0.01
LDLR-201ENST00000252444 TSNARE1Q96NA8 513 aa15□□□□□ -0.01
LDLR-201ENST00000252444 RIT2Q99578 217 aa15□□□□□ -0.01
LDLR-201ENST00000252444 ODF2LQ9ULJ1 636 aa15□□□□□ -0.01
LDLR-201ENST00000252444 hCG_1642624A0A1W2PR95 340 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 VGLL2Q8N8G2 317 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 LAMB4A4D0S4 1761 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 PSDA5PKW4 1024 aaPredicted RBP14.99□□□□□ -0.01
LDLR-201ENST00000252444 TBC1D12O60347 775 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 GAS8O95995 478 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 TMEM191BP0C7N4 346 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 OR8K1Q8NGG5 319 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 CCSER1Q9C0I3 900 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 GGA3Q9NZ52 723 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 SPP2Q13103 211 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 ADAM9Q13443 819 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 RAD54LQ92698 747 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 GPRASP2Q96D09 838 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 MROH8Q9H579 483 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 MYO1AQ9UBC5 1043 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 KCPQ6ZWJ8 1503 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 EIF3CLB5ME19 914 aaKnown RBP14.99□□□□□ -0.01
LDLR-201ENST00000252444 CAP2P40123 477 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 RFC5P40937 340 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 KCNB1Q14721 858 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 LDHDQ86WU2 507 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 AKT1S1Q96B36 256 aa14.99□□□□□ -0.01
LDLR-201ENST00000252444 FAM193BQ96PV7 902 aaPredicted RBP14.99□□□□□ -0.01
LDLR-201ENST00000252444 EIF3CQ99613 913 aaKnown RBP14.99□□□□□ -0.01
LDLR-201ENST00000252444 MED7O43513 233 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 NOLC1Q14978 699 aaKnown RBP eCLIP14.98□□□□□ -0.019e-6■□□□□ 9.6
LDLR-201ENST00000252444 RPS6KC1Q96S38 1066 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 EPB41L4AQ9HCS5 686 aaPredicted RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 GSTTP1A0A1W2PQM5 241 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 TNNI1P19237 187 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 EFNA5P52803 228 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 KLHL30Q0D2K2 578 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 METTL13Q8N6R0 699 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 ZC3H15Q8WU90 426 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 MTRF1LQ9UGC7 380 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 UQCRHLA0A096LP55 91 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 UQCRHP07919 91 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 NEFHP12036 1026 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 GBP1P32455 592 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 EVCP57679 992 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 UTP14CQ5TAP6 766 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 ANGEL2Q5VTE6 544 aaKnown RBP14.98□□□□□ -0.01
LDLR-201ENST00000252444 PDXDC2PQ6P474 469 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 PKD1L3Q7Z443 1732 aa14.98□□□□□ -0.01
LDLR-201ENST00000252444 METTL23Q86XA0 190 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms