RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 KIFC2Q96AC6 838 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 MBOAT7Q96N66 472 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 DUSP9Q99956 384 aaKnown RBP17.5■□□□□ 0.39
CLN3-251ENST00000636853 ARHGAP6O43182 974 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 MMP14P50281 582 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 CNNM4Q6P4Q7 775 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 P2RX5Q93086 422 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 VCPKMTQ9H867 229 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 PAXBP1Q9Y5B6 917 aa17.5■□□□□ 0.39
CLN3-251ENST00000636853 RASA3Q14644 834 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 ANKRD40Q6AI12 368 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 UNC13DQ70J99 1090 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 DDX12PQ92771 950 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 FAM86B1E9PN63 330 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 STX10O60499 249 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 FAM86B2P0C5J1 330 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 IDEP14735 1019 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 CCNE1P24864 410 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 SREBF1P36956 1147 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 FCHSD1Q86WN1 690 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 CSGALNACT2Q8N6G5 542 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 TBC1D5Q92609 795 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 MTFR1LQ9H019 292 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 THAP9Q9H5L6 903 aa17.49■□□□□ 0.39
CLN3-251ENST00000636853 BRCA1P38398 1863 aaKnown RBP17.48■□□□□ 0.39
CLN3-251ENST00000636853 FOSP01100 380 aaPredicted RBP17.48■□□□□ 0.39
CLN3-251ENST00000636853 GYPCP04921 128 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 CASP14P31944 242 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 MOXD1Q6UVY6 613 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 ETNPPLQ8TBG4 499 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 FBXO41Q8TF61 875 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 FBXO28Q9NVF7 368 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 KIAA1024Q9UPX6 916 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 BCS1LQ9Y276 419 aa17.48■□□□□ 0.39
CLN3-251ENST00000636853 PVALEFA0A1B0GWK0 134 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 POTEB3A0JP26 581 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 POTECB2RU33 542 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 E9PMD0 336 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 SSBP05455 408 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-251ENST00000636853 FXR1P51114 621 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-251ENST00000636853 UBXN1Q04323 297 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 TNIP1Q15025 636 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 MCTP2Q6DN12 878 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 POTEBQ6S5H4 581 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 SLFN12Q8IYM2 578 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 LENG9Q96B70 501 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 ITIH6Q6UXX5 1313 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 CFBP00751 764 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 DMTNQ08495 405 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 TOGARAM2Q6ZUX3 1019 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 REXO1L1PQ8IX06 675 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 CYP2W1Q8TAV3 490 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 CHURC1Q8WUH1 139 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 PANX2Q96RD6 677 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 SEMA6BQ9H3T3 888 aa17.47■□□□□ 0.39
CLN3-251ENST00000636853 MAGEC2Q9UBF1 373 aaPredicted RBP17.47■□□□□ 0.39
CLN3-251ENST00000636853 BICDL2A1A5D9 508 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 PES1O00541 588 aaKnown RBP17.46■□□□□ 0.39
CLN3-251ENST00000636853 MFAP3LO75121 409 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 ASNSP08243 561 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 EEF1GP26641 437 aaKnown RBP17.46■□□□□ 0.39
CLN3-251ENST00000636853 MAP3K10Q02779 954 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 MTF1Q14872 753 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 Q4G0T1 1027 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 HYIQ5T013 277 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 SYT10Q6XYQ8 523 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 RANBP17Q9H2T7 1088 aaKnown RBP17.46■□□□□ 0.39
CLN3-251ENST00000636853 PPP2R2CQ9Y2T4 447 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 KDM3AQ9Y4C1 1321 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 SOWAHDA6NJG2 315 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 PIK3CDO00329 1044 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 CCP110O43303 1012 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 MED24O75448 989 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 RASSF7Q02833 373 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 KIF18AQ8NI77 898 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 NT5C3AQ9H0P0 336 aa17.46■□□□□ 0.39
CLN3-251ENST00000636853 ASTN2O75129 1339 aaPredicted RBP17.46■□□□□ 0.39
CLN3-251ENST00000636853 PHF20L1A8MW92 1017 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 RNF225M0QZC1 329 aaPredicted RBP17.45■□□□□ 0.38
CLN3-251ENST00000636853 KIF2AO00139 706 aaPredicted RBP17.45■□□□□ 0.38
CLN3-251ENST00000636853 ZNF76P36508 570 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 PPP1R2P41236 205 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 SPIRE1Q08AE8 756 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 NCAPH2Q6IBW4 605 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 SAMD7Q7Z3H4 446 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 GLIS3Q8NEA6 775 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 NOC3LQ8WTT2 800 aaKnown RBP17.45■□□□□ 0.38
CLN3-251ENST00000636853 DNAJC19Q96DA6 116 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 DESI2Q9BSY9 194 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 ZNF341Q9BYN7 854 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 GTPBP4Q9BZE4 634 aaKnown RBP17.45■□□□□ 0.38
CLN3-251ENST00000636853 LRRC27Q9C0I9 530 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 SH2D4AQ9H788 454 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.45■□□□□ 0.38
CLN3-251ENST00000636853 LGALS16A8MUM7 142 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 ZNF280AP59817 542 aaPredicted RBP17.45■□□□□ 0.38
CLN3-251ENST00000636853 R3HDM1Q15032 1099 aaKnown RBP17.45■□□□□ 0.38
CLN3-251ENST00000636853 LRRC41Q15345 812 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 COBLL1Q53SF7 1204 aa17.45■□□□□ 0.38
CLN3-251ENST00000636853 MB21D1Q8N884 522 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms