RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CLIC4Q9Y696 253 aa7.51□□□□□ -1.21
SCN1A-213ENST00000636759 LAMB2P55268 1798 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 C5orf60A6NFR6 353 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 TEX33O43247 280 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 GUCY2FP51841 1108 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SF3A3Q12874 501 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 TCERG1LQ5VWI1 586 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CLASRPQ8N2M8 674 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 FNBP4Q8N3X1 1017 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 PRCCQ92733 491 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 FAM163AQ96GL9 167 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 POLR3EQ9NVU0 708 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 ABCF2Q9UG63 623 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 RREB1Q92766 1687 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 PHLPP1O60346 1717 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SH3TC1Q8TE82 1336 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 A0A1B0GTH6 734 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 ANO9A1A5B4 782 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 ERVV-2B6SEH9 535 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 ZNF185O15231 689 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 PRC1O43663 620 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SNRPA1P09661 255 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 TMOD1P28289 359 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 GSTT1P30711 240 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 KRT9P35527 623 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 EZH2Q15910 746 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 MUM1Q2TAK8 710 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 DZIP1Q86YF9 867 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CD302Q8IX05 232 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 IQCKQ8N0W5 287 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 NSUN7Q8NE18 718 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 KLHDC4Q8TBB5 520 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SMCR8Q8TEV9 937 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 ABTB1Q969K4 478 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CHMP6Q96FZ7 201 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 HIC2Q96JB3 615 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 TRAIPQ9BWF2 469 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 NSRP1Q9H0G5 558 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SAMSN1Q9NSI8 373 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CARMIL3Q8ND23 1372 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 ZMYM6O95789 1325 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SLIT2O94813 1529 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 NDUFA10O95299 355 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CYP21A2P08686 494 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CCDC166P0CW27 439 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 SERPINB4P48594 390 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 MAP7Q14244 749 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 C16orf87Q6PH81 154 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 AACSQ86V21 672 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 C1orf131Q8NDD1 294 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 HDAC7Q8WUI4 952 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 RAPGEF5Q92565 580 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 METTL22Q9BUU2 404 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 CARD9Q9H257 536 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 TRIM10Q9UDY6 481 aa7.5□□□□□ -1.21
SCN1A-213ENST00000636759 LUC7L2Q9Y383 392 aaKnown RBP7.5□□□□□ -1.21
SCN1A-213ENST00000636759 MYH2Q9UKX2 1941 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 MYH13Q9UKX3 1938 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 PALM3A6NDB9 673 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 IGF2BP3O00425 579 aaKnown RBP eCLIP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 IFIT3O14879 490 aaKnown RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 SUPT3HO75486 399 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ALADP13716 330 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ALOX15P16050 662 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ZNF18P17022 549 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ATP6V1C1P21283 382 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 RAD23BP54727 409 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 PPP2R2AP63151 447 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ADCY1Q08828 1119 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 BIRC3Q13489 604 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 GCKRQ14397 625 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 HLTFQ14527 1009 aaKnown RBP eCLIP7.49□□□□□ -1.216e-7■■■■□ 22.5
SCN1A-213ENST00000636759 ANO1Q5XXA6 986 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 KLHL10Q6JEL2 608 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 TRPM8Q7Z2W7 1104 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ZBTB8BQ8NAP8 495 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 SMYD1Q8NB12 490 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 AGAP3Q96P47 875 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 CTTNBP2NLQ9P2B4 639 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 NFU1Q9UMS0 254 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 PLAAQ9Y263 795 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 TMEM98Q9Y2Y6 226 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 USH1CQ9Y6N9 552 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 PDE2AO00408 941 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 CTNND1O60716 968 aaKnown RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 DDX58O95786 925 aaKnown RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 USP46P62068 366 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 KCNJ2P63252 427 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 PABPC1LQ4VXU2 614 aaKnown RBP7.49□□□□□ -1.21
SCN1A-213ENST00000636759 ATG9AQ7Z3C6 839 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 NANOGNBQ7Z5D8 188 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 SLF2Q8IX21 1173 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 SPATA4Q8NEY3 305 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 LRRC2Q9BYS8 371 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 SLC12A4Q9UP95 1085 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 NUP98P52948 1817 aa7.49□□□□□ -1.21
SCN1A-213ENST00000636759 IPO5O00410 1097 aaKnown RBP7.48□□□□□ -1.21
SCN1A-213ENST00000636759 MSH2P43246 934 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms