RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 EXOSC10Q01780 885 aaKnown RBP18.02■□□□□ 0.48
LINC00339-209ENST00000635450 CCDC62Q6P9F0 684 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 BLOC1S2Q6QNY1 142 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 SEPT14Q6ZU15 432 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 SGMS1Q86VZ5 419 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 IL31RAQ8NI17 732 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 RMDN3Q96TC7 470 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 LZTS2Q9BRK4 669 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 AMNQ9BXJ7 453 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 MAF1Q9H063 256 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 ALDH8A1Q9H2A2 487 aaPredicted RBP18.02■□□□□ 0.48
LINC00339-209ENST00000635450 HIPK3Q9H422 1215 aa18.02■□□□□ 0.48
LINC00339-209ENST00000635450 MRPL11Q9Y3B7 192 aaKnown RBP18.02■□□□□ 0.48
LINC00339-209ENST00000635450 CYP2C9P11712 490 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 HOXA13P31271 388 aaPredicted RBP18.01■□□□□ 0.47
LINC00339-209ENST00000635450 CPT1AP50416 773 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 HSD17B4P51659 736 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 CCL23P55773 120 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 ARHGAP1Q07960 439 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 PPIGQ13427 754 aaKnown RBP eCLIP18.01■□□□□ 0.47
LINC00339-209ENST00000635450 LY6KQ17RY6 165 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 ZNF365Q70YC5 407 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 MCF2L2Q86YR7 1114 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 TCEANC2Q96MN5 208 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 USP26Q9BXU7 913 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 SEMA6BQ9H3T3 888 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 RIOX1Q9H6W3 641 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 PXMP2Q9NR77 195 aa18.01■□□□□ 0.47
LINC00339-209ENST00000635450 CXXC1Q9P0U4 656 aaPredicted RBP18.01■□□□□ 0.47
LINC00339-209ENST00000635450 A6NJR5 290 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 PBX2P40425 430 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 TTLL4Q14679 1199 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 NBPF20Q3BBV1 942 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 RASIP1Q5U651 963 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 SLC17A8Q8NDX2 589 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 NSUN6Q8TEA1 469 aaKnown RBP18■□□□□ 0.47
LINC00339-209ENST00000635450 AFG1LQ8WV93 481 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 PIBF1Q8WXW3 757 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 SCLYQ96I15 445 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 ZFP91Q96JP5 570 aaPredicted RBP18■□□□□ 0.47
LINC00339-209ENST00000635450 MPHOSPH6Q99547 160 aaKnown RBP18■□□□□ 0.47
LINC00339-209ENST00000635450 CDX2Q99626 313 aaPredicted RBP18■□□□□ 0.47
LINC00339-209ENST00000635450 MTG1Q9BT17 334 aaPredicted RBP18■□□□□ 0.47
LINC00339-209ENST00000635450 POLR3EQ9NVU0 708 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 CHD7Q9P2D1 2997 aa18■□□□□ 0.47
LINC00339-209ENST00000635450 NKRFO15226 690 aaKnown RBP eCLIP17.99■□□□□ 0.47
LINC00339-209ENST00000635450 RGS20O76081 388 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 MMP3P08254 477 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 RXRAP19793 462 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 SMARCA1P28370 1054 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 GHRHRQ02643 423 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 MICU3Q86XE3 530 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 TMEM199Q8N511 208 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 MYLIPQ8WY64 445 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 IL23AQ9NPF7 189 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 PCDHA1Q9Y5I3 950 aa17.99■□□□□ 0.47
LINC00339-209ENST00000635450 PNMA6FA0A0J9YX94 578 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 B4DLN1 442 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 SORBS3O60504 671 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 CASTP20810 708 aaKnown RBP17.98■□□□□ 0.47
LINC00339-209ENST00000635450 DNAJB2P25686 324 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 MRPL12P52815 198 aaKnown RBP17.98■□□□□ 0.47
LINC00339-209ENST00000635450 FAM47CQ5HY64 1035 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 ARHGEF16Q5VV41 709 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 APOA5Q6Q788 366 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 Q6ZUG5 572 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 RAB11FIP4Q86YS3 637 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 FANCBQ8NB91 859 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 GPKOWQ92917 476 aaPredicted RBP eCLIP17.98■□□□□ 0.47
LINC00339-209ENST00000635450 RRP36Q96EU6 259 aaKnown RBP17.98■□□□□ 0.47
LINC00339-209ENST00000635450 PDCD2LQ9BRP1 358 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 SPZ1Q9BXG8 430 aa17.98■□□□□ 0.47
LINC00339-209ENST00000635450 SEC63Q9UGP8 760 aaKnown RBP17.98■□□□□ 0.47
LINC00339-209ENST00000635450 NAP1L2Q9ULW6 460 aaPredicted RBP17.98■□□□□ 0.47
LINC00339-209ENST00000635450 VCANP13611 3396 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 KLF18A0A0U1RQI7 1052 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 ZBTB43O43298 467 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 NR3C2P08235 984 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 CPA1P15085 419 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 RPS6KB1P23443 525 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 CHMP4BP1P59074 171 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 STXBP2Q15833 593 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 PSRC1Q6PGN9 363 aaPredicted RBP17.97■□□□□ 0.47
LINC00339-209ENST00000635450 KAT2BQ92831 832 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 CTAGE1Q96RT6 745 aa17.97■□□□□ 0.47
LINC00339-209ENST00000635450 RBM28Q9NW13 759 aaKnown RBP17.97■□□□□ 0.47
LINC00339-209ENST00000635450 PLEKHA8P1O95397 391 aa17.96■□□□□ 0.47
LINC00339-209ENST00000635450 GH1P01241 217 aa17.96■□□□□ 0.47
LINC00339-209ENST00000635450 MYCLP12524 364 aaPredicted RBP17.96■□□□□ 0.47
LINC00339-209ENST00000635450 RTN1Q16799 776 aa17.96■□□□□ 0.47
LINC00339-209ENST00000635450 OTOP2Q7RTS6 562 aa17.96■□□□□ 0.47
LINC00339-209ENST00000635450 CMTR1Q8N1G2 835 aaKnown RBP17.96■□□□□ 0.47
LINC00339-209ENST00000635450 IWS1Q96ST2 819 aa17.96■□□□□ 0.47
LINC00339-209ENST00000635450 PBX4Q9BYU1 374 aa17.96■□□□□ 0.47
LINC00339-209ENST00000635450 DDX41Q9UJV9 622 aaKnown RBP17.96■□□□□ 0.47
LINC00339-209ENST00000635450 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.95■□□□□ 0.46
LINC00339-209ENST00000635450 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.95■□□□□ 0.46
LINC00339-209ENST00000635450 GOLGA8AA7E2F4 631 aa17.95■□□□□ 0.46
LINC00339-209ENST00000635450 GOLGA8BA8MQT2 603 aa17.95■□□□□ 0.46
LINC00339-209ENST00000635450 ZNF286BP0CG31 522 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms