RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 MTF1Q14872 753 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 SYT10Q6XYQ8 523 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 P2RX5Q93086 422 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 VPS33BQ9H267 617 aa23.8■■□□□ 1.4
LIME1-210ENST00000621325 CYP3A7-CYP3A51PA0A087WV96 503 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 RNF225M0QZC1 329 aaPredicted RBP23.79■■□□□ 1.4
LIME1-210ENST00000621325 CYP3A7P24462 503 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 PRR16Q569H4 304 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 MTMR14Q8NCE2 650 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 ANKRD20A12PQ8NF67 263 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 ZBED3Q96IU2 234 aaPredicted RBP23.79■■□□□ 1.4
LIME1-210ENST00000621325 MBOAT7Q96N66 472 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 PGAP2Q9UHJ9 254 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 PPP2R2CQ9Y2T4 447 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 CSGALNACT2Q8N6G5 542 aa23.79■■□□□ 1.4
LIME1-210ENST00000621325 NAP1L4Q99733 375 aaKnown RBP23.79■■□□□ 1.4
LIME1-210ENST00000621325 KIF13BQ9NQT8 1826 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 MFAP3LO75121 409 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 CCNE1P24864 410 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 MMP14P50281 582 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 FKBP1CQ5VVH2 108 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 KIF18AQ8NI77 898 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 DDX12PQ92771 950 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 PANX2Q96RD6 677 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 DESI2Q9BSY9 194 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 THAP9Q9H5L6 903 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 PPP1R1BQ9UD71 204 aaPredicted RBP23.78■■□□□ 1.4
LIME1-210ENST00000621325 SYNPO2Q9UMS6 1093 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 ITIH6Q6UXX5 1313 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 SOWAHDA6NJG2 315 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 FAM86B1E9PN63 330 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 CTIFO43310 598 aaKnown RBP23.78■■□□□ 1.4
LIME1-210ENST00000621325 EGFRP00533 1210 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 FAM86B2P0C5J1 330 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 UBXN1Q04323 297 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 DALRD3Q5D0E6 543 aaKnown RBP23.78■■□□□ 1.4
LIME1-210ENST00000621325 CNNM4Q6P4Q7 775 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 UNC13DQ70J99 1090 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 GOPCQ9HD26 462 aa23.78■■□□□ 1.4
LIME1-210ENST00000621325 SPDYE3A6NKU9 549 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 IDEP14735 1019 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 CIAPIN1Q6FI81 312 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 SAMD1Q6SPF0 538 aaPredicted RBP23.77■■□□□ 1.4
LIME1-210ENST00000621325 FCHSD1Q86WN1 690 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 TBC1D5Q92609 795 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 LENG9Q96B70 501 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 TAOK3Q9H2K8 898 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 SEMA6BQ9H3T3 888 aa23.77■■□□□ 1.4
LIME1-210ENST00000621325 TGFB2P61812 414 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 CCDC174Q6PII3 467 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 FAM83AQ86UY5 434 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 ETNPPLQ8TBG4 499 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 MYOZ2Q9NPC6 264 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 POTEB3A0JP26 581 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 POTECB2RU33 542 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 E9PMD0 336 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 KIF2AO00139 706 aaPredicted RBP23.76■■□□□ 1.39
LIME1-210ENST00000621325 NKRFO15226 690 aaKnown RBP eCLIP23.76■■□□□ 1.399e-8■■□□□ 13.9
LIME1-210ENST00000621325 TBC1D12O60347 775 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 CAP2P40123 477 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 POTEBQ6S5H4 581 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 GLIS3Q8NEA6 775 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 CYP2W1Q8TAV3 490 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 KIFC2Q96AC6 838 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 KIAA1024Q9UPX6 916 aa23.76■■□□□ 1.39
LIME1-210ENST00000621325 PVALEFA0A1B0GWK0 134 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 EEF1GP26641 437 aaKnown RBP23.75■■□□□ 1.39
LIME1-210ENST00000621325 SREBF1P36956 1147 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 TRIM65Q6PJ69 517 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 NFKBIEO00221 500 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 FANCGO15287 622 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 CCP110O43303 1012 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 SSBP05455 408 aaKnown RBP eCLIP23.75■■□□□ 1.39
LIME1-210ENST00000621325 MOXD1Q6UVY6 613 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 RAD9BQ6WBX8 426 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 VCPKMTQ9H867 229 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 FBXO28Q9NVF7 368 aa23.75■■□□□ 1.39
LIME1-210ENST00000621325 SPDYE4A6NLX3 237 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 PES1O00541 588 aaKnown RBP23.74■■□□□ 1.39
LIME1-210ENST00000621325 SPIRE1Q08AE8 756 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 HYIQ5T013 277 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 JDP2Q8WYK2 163 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 BICDL2A1A5D9 508 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 LGALS16A8MUM7 142 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 ZSCAN12O43309 604 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 MED24O75448 989 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 FOSP01100 380 aaPredicted RBP23.74■■□□□ 1.39
LIME1-210ENST00000621325 ETF1P62495 437 aaKnown RBP23.74■■□□□ 1.39
LIME1-210ENST00000621325 NAA30Q147X3 362 aaPredicted RBP23.74■■□□□ 1.39
LIME1-210ENST00000621325 TAF3Q5VWG9 929 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 MB21D1Q8N884 522 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 ZNF507Q8TCN5 953 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 DNAJC19Q96DA6 116 aa23.74■■□□□ 1.39
LIME1-210ENST00000621325 MAGEC2Q9UBF1 373 aaPredicted RBP23.74■■□□□ 1.39
LIME1-210ENST00000621325 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.74■■□□□ 1.395e-7■■■■■ 31.5
LIME1-210ENST00000621325 LRRC41Q15345 812 aa23.73■■□□□ 1.39
LIME1-210ENST00000621325 COBLL1Q53SF7 1204 aa23.73■■□□□ 1.39
LIME1-210ENST00000621325 B4DLN1 442 aa23.73■■□□□ 1.39
LIME1-210ENST00000621325 EHHADHQ08426 723 aa23.73■■□□□ 1.39
LIME1-210ENST00000621325 RASA3Q14644 834 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms