RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	HERVK_113	P62684	666 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	CCDC144B	Q3MJ40	725 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	SHC4	Q6S5L8	630 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	FCHSD1	Q86WN1	690 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	C4orf32	Q8N8J7	132 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	TBC1D5	Q92609	795 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	RNF146	Q9NTX7	359 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	FAM13B	Q9NYF5	915 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	PNMA3	Q9UL41	463 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	SLC45A1	Q9Y2W3	748 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	LOC285556	D6RIA3	1793 aa		13.18	□□□□□ -0.3
VRK3-223	ENST00000601341	PTPRF	P10586	1907 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	CCL15-CCL14	A0A0B4J2E2	113 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	SREBF1	P36956	1147 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	LRMP	Q12912	555 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	MKRN3	Q13064	507 aa	Known RBP	13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	PLS1	Q14651	629 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	CCL15	Q16663	113 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	MUM1L1	Q5H9M0	696 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	NT5DC1	Q5TFE4	455 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	KANK3	Q6NY19	840 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	SAPCD2	Q86UD0	394 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	UBE2Q2	Q8WVN8	375 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	CCDC34	Q96HJ3	373 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	CLIC6	Q96NY7	704 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	MAF1	Q9H063	256 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	RIPK3	Q9Y572	518 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	CBFA2T2	O43439	604 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	SKIL	P12757	684 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	PRPH	P41219	470 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	ZNF157	P51786	506 aa	Predicted RBP	13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	ARHGAP4	P98171	946 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	NCAPH	Q15003	741 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	MOXD1	Q6UVY6	613 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	TRIML1	Q8N9V2	468 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	CRYGN	Q8WXF5	182 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	KCNH3	Q9ULD8	1083 aa		13.17	□□□□□ -0.3
VRK3-223	ENST00000601341	RLF	Q13129	1914 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	EDIL3	O43854	480 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	TOMM70	O94826	608 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	CYP3A7	P24462	503 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	CCZ1B	P86790	482 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	CCZ1	P86791	482 aa	Predicted RBP	13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	MYL5	Q02045	173 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	DTHD1	Q6ZMT9	781 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	KRBA2	Q6ZNG9	492 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	RNF207	Q6ZRF8	634 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	NYAP1	Q6ZVC0	841 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	ANKRD23	Q86SG2	305 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	CHST13	Q8NET6	341 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	BRI3BP	Q8WY22	251 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	ACAD9	Q9H845	621 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	BTBD7	Q9P203	1132 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	DDX25	Q9UHL0	483 aa	Known RBP	13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	RABGAP1	Q9Y3P9	1069 aa		13.16	□□□□□ -0.3
VRK3-223	ENST00000601341	PARP14	Q460N5	1801 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	VWA3A	A6NCI4	1184 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	BTBD19	C9JJ37	291 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	PDHX	O00330	501 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	CCP110	O43303	1012 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	TDP2	O95551	362 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	CYP3A4	P08684	503 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	OR52Z1	P0C646	297 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	TNNT1	P13805	278 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	RPS6	P62753	249 aa	Known RBP	13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	RGMB	Q6NW40	437 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	POTEE	Q6S8J3	1075 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	NSMF	Q6X4W1	530 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	RIOX2	Q8IUF8	465 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	SPATC1L	Q9H0A9	340 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	CSRNP2	Q9H175	543 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	TMEM60	Q9H2L4	133 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	FBXO40	Q9UH90	709 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	DACH1	Q9UI36	760 aa		13.15	□□□□□ -0.3
VRK3-223	ENST00000601341	RIOK3	O14730	519 aa	Known RBP	13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	CIITA	P33076	1130 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	COPB2	P35606	906 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	ZNF76	P36508	570 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	LONP1	P36776	959 aa	Known RBP	13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	GRIN1	Q05586	938 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	CALCRL	Q16602	461 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	POTED	Q86YR6	584 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	RASAL3	Q86YV0	1011 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	CNNM3	Q8NE01	707 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	CCDC112	Q8NEF3	446 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	MBOAT7	Q96N66	472 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	PAGR1	Q9BTK6	254 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	RBPJL	Q9UBG7	517 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	TLL2	Q9Y6L7	1015 aa		13.15	□□□□□ -0.31
VRK3-223	ENST00000601341	TRPM7	Q96QT4	1865 aa		13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	SLC37A4	O43826	429 aa		13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	SLC25A27	O95847	323 aa		13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	MDM2	Q00987	491 aa	Predicted RBP	13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	TPD52L1	Q16890	204 aa	Predicted RBP	13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	MLKL	Q8NB16	471 aa		13.14	□□□□□ -0.31
VRK3-223	ENST00000601341	ANKRD7	Q92527	254 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms