RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 NT5C2P49902 561 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 ERVK-24P63145 666 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 AMPD3Q01432 767 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 RSBN1LQ6PCB5 846 aaPredicted RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 MNS1Q8NEH6 495 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 RAD54LQ92698 747 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 FEZ1Q99689 392 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 NOC4LQ9BVI4 516 aaKnown RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 AMNQ9BXJ7 453 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 MORC2Q9Y6X9 1032 aaPredicted RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 TTC26A0AVF1 554 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 H7C1D1 291 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 ZBTB22O15209 634 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 EGFRP00533 1210 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 CCDC175P0C221 793 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 SMARCA1P28370 1054 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 ARHGAP4P98171 946 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 PABPC4Q13310 644 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS53-206ENST00000570359 SYCP1Q15431 976 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 ENOX2Q16206 610 aaKnown RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 TTI2Q6NXR4 508 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 TRIM65Q6PJ69 517 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 CCDC155Q8N6L0 562 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 SEMA6BQ9H3T3 888 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 FAM207AQ9NSI2 230 aaPredicted RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 ABHD10Q9NUJ1 306 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 NYAP2Q9P242 653 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 LIMA1Q9UHB6 759 aaKnown RBP11.08□□□□□ -0.64
VPS53-206ENST00000570359 SIPA1L1O43166 1804 aa11.08□□□□□ -0.64
VPS53-206ENST00000570359 DDX39AO00148 427 aaKnown RBP11.07□□□□□ -0.64
VPS53-206ENST00000570359 MEIS2O14770 477 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 CTIFO43310 598 aaKnown RBP11.07□□□□□ -0.64
VPS53-206ENST00000570359 SPAG1Q07617 926 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 TBC1D8BQ0IIM8 1120 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 ARHGAP29Q52LW3 1261 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 PRAMEF18Q5VWM3 479 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 TATDN1Q6P1N9 297 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 GPBP1Q86WP2 473 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 DCAF4Q8WV16 495 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 BCAS3Q9H6U6 928 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 AGPAT5Q9NUQ2 364 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 PRR12Q9ULL5 1215 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 hCG_1984214I3L0E3 225 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 PBX1P40424 430 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 CLK2P49760 499 aaKnown RBP11.07□□□□□ -0.64
VPS53-206ENST00000570359 KCNB1Q14721 858 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 ZNF569Q5MCW4 686 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 CNNM4Q6P4Q7 775 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 CNGA4Q8IV77 575 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 NIM1KQ8IY84 436 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 CPXCR1Q8N123 301 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 ZNF713Q8N859 430 aaPredicted RBP11.07□□□□□ -0.64
VPS53-206ENST00000570359 MB21D1Q8N884 522 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 HDAC9Q9UKV0 1011 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 GJA3Q9Y6H8 435 aa11.07□□□□□ -0.64
VPS53-206ENST00000570359 FAM86B1E9PN63 330 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 CCP110O43303 1012 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 MED24O75448 989 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 FAM86B2P0C5J1 330 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 FXR2P51116 673 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS53-206ENST00000570359 STAT2P52630 851 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 PSMC6P62333 389 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 DMTNQ08495 405 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 TEX35Q5T0J7 233 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 SUPT20HQ8NEM7 779 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 C7orf25Q9BPX7 421 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS53-206ENST00000570359 ASTN2O75129 1339 aaPredicted RBP11.06□□□□□ -0.64
VPS53-206ENST00000570359 CCNE1P24864 410 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 HERC4Q5GLZ8 1057 aaPredicted RBP11.06□□□□□ -0.64
VPS53-206ENST00000570359 MMRN2Q9H8L6 949 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 PANK4Q9NVE7 773 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 PUF60Q9UHX1 559 aaKnown RBP11.06□□□□□ -0.64
VPS53-206ENST00000570359 GUCA1BQ9UMX6 200 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 ADGRG1Q9Y653 693 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 COL4A5P29400 1685 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 QSER1Q2KHR3 1735 aa11.06□□□□□ -0.64
VPS53-206ENST00000570359 SFI1A8K8P3 1242 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 LGALS16A8MUM7 142 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 KIF2AO00139 706 aaPredicted RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 COASYQ13057 564 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 PANX2Q96RD6 677 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 CRACR2AQ9BSW2 395 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 ARHGEF10LQ9HCE6 1279 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 BMP2KQ9NSY1 1161 aaPredicted RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 RGL1Q9NZL6 768 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 ZBTB21Q9ULJ3 1066 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 LUC7L2Q9Y383 392 aaKnown RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 PCNTO95613 3336 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 MYO3BQ8WXR4 1341 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 TRAF5O00463 557 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 PLA2G4BP0C869 781 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 HMGB2P26583 209 aaKnown RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 BAG6P46379 1132 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 APBA1Q02410 837 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 TSR1Q2NL82 804 aaKnown RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 PPP1R18Q6NYC8 613 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 PIGOQ8TEQ8 1089 aa11.05□□□□□ -0.64
VPS53-206ENST00000570359 SMCR8Q8TEV9 937 aaPredicted RBP11.05□□□□□ -0.64
VPS53-206ENST00000570359 CUEDC2Q9H467 287 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms