RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 BCL2L13Q9BXK5 485 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 MIR1-1HGQ9H1L0 117 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 NSUN3Q9H649 340 aaKnown RBP7.08□□□□□ -1.28
VPS35-204ENST00000563884 TJP2Q9UDY2 1190 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 ETV3P41162 512 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 AMPHP49418 695 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 PDE4BQ07343 736 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 KRTAP19-4Q3LI73 84 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 TMCO4Q5TGY1 634 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 SAPCD2Q86UD0 394 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS35-204ENST00000563884 FBXO15Q8NCQ5 510 aaPredicted RBP7.07□□□□□ -1.28
VPS35-204ENST00000563884 ABHD4Q8TB40 342 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 ZSCAN18Q8TBC5 510 aaPredicted RBP7.07□□□□□ -1.28
VPS35-204ENST00000563884 TMEM87BQ96K49 555 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 RSRP1Q9BUV0 290 aa7.07□□□□□ -1.28
VPS35-204ENST00000563884 EDC4Q6P2E9 1401 aaKnown RBP7.07□□□□□ -1.28
VPS35-204ENST00000563884 KIAA0100Q14667 2235 aaKnown RBP7.07□□□□□ -1.28
VPS35-204ENST00000563884 RNF123Q5XPI4 1314 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 NFIBO00712 420 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 CFPP27918 469 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 SLC6A19Q695T7 634 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 TMPRSS7Q7RTY8 843 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 MRPL41Q8IXM3 137 aaKnown RBP7.06□□□□□ -1.28
VPS35-204ENST00000563884 GPC2Q8N158 579 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 JARID2Q92833 1246 aaPredicted RBP7.06□□□□□ -1.28
VPS35-204ENST00000563884 COL6A3P12111 3177 aa7.06□□□□□ -1.28
VPS35-204ENST00000563884 WASHC2AQ641Q2 1341 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 SZT2Q5T011 3432 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 DNAJC25-GNG10A0A024R161 153 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 HOXC9P31274 260 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 PDE6BP35913 854 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 HK2P52789 917 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 TSNAXIP1Q2TAA8 658 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 LCE4AQ5TA78 99 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 INTS3Q68E01 1043 aaKnown RBP7.05□□□□□ -1.28
VPS35-204ENST00000563884 CREG2Q8IUH2 290 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 CILP2Q8IUL8 1156 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 LRRC56Q8IYG6 542 aaPredicted RBP7.05□□□□□ -1.28
VPS35-204ENST00000563884 PIWIL2Q8TC59 973 aaKnown RBP7.05□□□□□ -1.28
VPS35-204ENST00000563884 GIPC2Q8TF65 315 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 ZNF622Q969S3 477 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS35-204ENST00000563884 MRS2Q9HD23 443 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 VTI1BQ9UEU0 232 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 HDAC9Q9UKV0 1011 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 TLR6Q9Y2C9 796 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 LAMB4A4D0S4 1761 aa7.05□□□□□ -1.28
VPS35-204ENST00000563884 SCN7AQ01118 1682 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 CYP27B1O15528 508 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 CELF2O95319 508 aaKnown RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 ESR1P03372 595 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 C1QTNF9P0C862 333 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 TM4SF1P30408 202 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 LMNB2Q03252 620 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 RALGPS1Q5JS13 557 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 CST9Q5W186 159 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 DIEXFQ68CQ4 756 aaKnown RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 FBXO46Q6PJ61 603 aaPredicted RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 USP50Q70EL3 339 aaPredicted RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 HDGFL2Q7Z4V5 671 aaPredicted RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 NME9Q86XW9 330 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 MCATQ8IVS2 390 aaKnown RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 MYLIPQ8WY64 445 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 RHOVQ96L33 236 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 DCP1AQ9NPI6 582 aaPredicted RBP7.04□□□□□ -1.28
VPS35-204ENST00000563884 TMEM59LQ9UK28 342 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 ASAP1Q9ULH1 1129 aa7.04□□□□□ -1.28
VPS35-204ENST00000563884 ZNF541Q9H0D2 1346 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 FAM221AA4D161 298 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 WASH4PA8MWX3 477 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 TMEM253P0C7T8 217 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 ZNF16P17020 682 aaPredicted RBP7.03□□□□□ -1.28
VPS35-204ENST00000563884 TPP2P29144 1249 aaPredicted RBP7.03□□□□□ -1.28
VPS35-204ENST00000563884 RPL6Q02878 288 aaKnown RBP7.03□□□□□ -1.28
VPS35-204ENST00000563884 CCDC93Q567U6 631 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 LDLRAD1Q5T700 205 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 ERMP1Q7Z2K6 904 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 TMEM74Q96NL1 305 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 EPB41L4BQ9H329 900 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 TRIT1Q9H3H1 467 aaKnown RBP7.03□□□□□ -1.28
VPS35-204ENST00000563884 KCNK12Q9HB15 430 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 SBNO2Q9Y2G9 1366 aa7.03□□□□□ -1.28
VPS35-204ENST00000563884 KIF20BQ96Q89 1820 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 CILPO75339 1184 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 SERPINB2P05120 415 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 MFAP1P55081 439 aaKnown RBP7.02□□□□□ -1.29
VPS35-204ENST00000563884 ERVFC1P60507 584 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 CAMK2GQ13555 558 aaPredicted RBP7.02□□□□□ -1.29
VPS35-204ENST00000563884 DNAJB8Q8NHS0 232 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 JDP2Q8WYK2 163 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 ACSF2Q96CM8 615 aaPredicted RBP7.02□□□□□ -1.29
VPS35-204ENST00000563884 Q96M66 194 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 ADAMTS10Q9H324 1103 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 KCNQ5Q9NR82 932 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 GPATCH2Q9NW75 528 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 SRP68Q9UHB9 627 aaKnown RBP7.02□□□□□ -1.29
VPS35-204ENST00000563884 ADAM30Q9UKF2 790 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 CEP131Q9UPN4 1083 aa7.02□□□□□ -1.29
VPS35-204ENST00000563884 MKI67P46013 3256 aaKnown RBP7.02□□□□□ -1.29
VPS35-204ENST00000563884 TRAF5O00463 557 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms