RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PURBQ96QR8 312 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 CTAGE1Q96RT6 745 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 MAP7D2Q96T17 732 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 SEMA6BQ9H3T3 888 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 BLOC1S4Q9NUP1 217 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PANK4Q9NVE7 773 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 STK32BQ9NY57 414 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 EHD2Q9NZN4 543 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PCDHB13Q9Y5F0 798 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PLCH1Q4KWH8 1693 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 TMCO5BA8MYB1 307 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PSMD14O00487 310 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PNMA6AP0CW24 399 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 LLGL1Q15334 1064 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 NBPF9Q3BBW0 867 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 NT5DC1Q5TFE4 455 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 TMCO3Q6UWJ1 677 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 UBE2Q2Q8WVN8 375 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 P2RX7Q99572 595 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 DUSP9Q99956 384 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 LZTS2Q9BRK4 669 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 ABHD10Q9NUJ1 306 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 SEPT11Q9NVA2 429 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 CTDP1Q9Y5B0 961 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 MYH6P13533 1939 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 YDJCA8MPS7 323 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 H7C1D1 291 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF185O15231 689 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 PEX10O60683 326 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 MYCLP12524 364 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 DPEP1P16444 411 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 TBX2Q13207 712 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ASPRV1Q53RT3 343 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 CDKAL1Q5VV42 579 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 PODNQ7Z5L7 613 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 CNGA4Q8IV77 575 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 GSPT2Q8IYD1 628 aaKnown RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 OR8K1Q8NGG5 319 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 CCDC42Q96M95 316 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 RAB34Q9BZG1 259 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 BHMT2Q9H2M3 363 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 RIOX1Q9H6W3 641 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 MLXIPQ9HAP2 919 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 CGNQ9P2M7 1197 aaKnown RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 LTBP4Q8N2S1 1624 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 GAKO14976 1311 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 DDX60Q8IY21 1712 aaKnown RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 TMEM150BA6NC51 233 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 CTIFO43310 598 aaKnown RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 MED24O75448 989 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 PLA2G4BP0C869 781 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ATXN8OSP0DMR3 200 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 BMP3P12645 472 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ACTN1P12814 892 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ALAS1P13196 640 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 CCNE1P24864 410 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 TNNT3P45378 269 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 KCNA1Q09470 495 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 RAPGEF1Q13905 1077 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 KIAA1755Q5JYT7 1200 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 FAM26FQ5R3K3 315 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 DACT2Q5SW24 774 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 NSMFQ6X4W1 530 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF397Q8NF99 534 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-215ENST00000552823 SPATA20Q8TB22 786 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 AKT1S1Q96B36 256 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 LACRTQ9GZZ8 138 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 GOLPH3Q9H4A6 298 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 RABEP2Q9H5N1 569 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 SH3GLB2Q9NR46 395 aa6.22□□□□□ -1.41
LIMA1-215ENST00000552823 ASTN2O75129 1339 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-215ENST00000552823 SNED1Q8TER0 1413 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 KIF2AO00139 706 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-215ENST00000552823 CCP110O43303 1012 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 NCK2O43639 380 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 EDIL3O43854 480 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 EGFRP00533 1210 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 POLR2FP61218 127 aaKnown RBP6.21□□□□□ -1.41
LIMA1-215ENST00000552823 ARHGAP4P98171 946 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 GABPAQ06546 454 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 SPAG1Q07617 926 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 SF3B2Q13435 895 aaKnown RBP6.21□□□□□ -1.41
LIMA1-215ENST00000552823 SAMD7Q7Z3H4 446 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 RGS22Q8NE09 1264 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 HAS1Q92839 578 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 FAM84AQ96KN4 292 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 CCSER1Q9C0I3 900 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 KBTBD4Q9NVX7 518 aa6.21□□□□□ -1.41
LIMA1-215ENST00000552823 AHDC1Q5TGY3 1603 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-215ENST00000552823 DUOX1Q9NRD9 1551 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 CTAGE9A4FU28 777 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 RCCD1A6NED2 376 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 M0R2N6 131 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 GCNT3O95395 438 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 SYDE2Q5VT97 1194 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 TTI2Q6NXR4 508 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 CNNM4Q6P4Q7 775 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 CYP26C1Q6V0L0 522 aa6.21□□□□□ -1.42
LIMA1-215ENST00000552823 GIMAP8Q8ND71 665 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-215ENST00000552823 ANKRD7Q92527 254 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms